Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00904 ATGAAGGAAGCAGAACAGAGTTTGGATCCTCAGCTATGGCACGCTTGTGCTGGAAGTATGGTTCAAATGCCTGTAGTGAACTCTAAAGTTTTCTACTTTCCTCAAGGCCATGCGGAGCACGCACAGGCCAACGTTGATTTCGCTGCTTCTCTAAGGATTCCATCTCTAATTCGTTGCCGAGTTGCGGCTGTGAAATTCTTAGCGGATCATGAAACAGATGAAGTTTATGCTAAGATAAAATTGATTCCGTTAGGGAACACTGAATTTGATTATGATGACGATGGTGTATGTGGAAACAATGGGTCTGAGAATTCAGAGAAGCCAGCTTCTTTCGCCAAGACATTGACCCAATCAGATGCCAACAATGGAGGTGGTTTTTCTGTTCCGAGGTACTGTGCAGAAACTATCTTCCCCAGGTTAGATTACTCTGCAGATCCACCTGTTCAAACTGTCATGGCTAAGGATGTTCATGGTGAAACTTGGAAGTTTAGGCACATATACAGAGGGACACCTCGCCGGCATCTGCTCACAACTGGGTGGAGCAATTTTGTGAACCAGAAAAAGTTGGTTGCTGGGGACTCAATTGTGTTTTTAAGAGCTGAGAGTGGAGATTTATGTGTTGGAATTCGTCGAACTAAGAGAGGAATGGGGGGATTAGACTCTCCATCTGGGTGGAACACTGGTCATGGAAGCTGTGTTGGACCTTATGGACCCTTCTCTGCTTTCCTTAGAGACGCAGAGAACAAACTTTTGAGAAATGGTTGTGGGAATTCAGGCGCAGGTGGTGCGAATTTGAGGGGTAAAGGAAAAGTGAGAGCTGAATCTGTAATGGATGCTGCAGCTCTTGCTGCAAGTGGTCAGCCTTTTGAGGTTGTGTATTACCCAAGAGCAAGTACTCCTGAGTTCTGTGTTAAGGAAGCATCTGTAAGAGGTGCAATGAGGATTCAGTGGTGTTCTGGAATGAGGTTCAAAATGGCATTTGAGACCGAGGATTCTTCTCGCATAAGCTGGTTCATGGGCACTGTTACTTCTGTTCAGGTTGTTGATCCCATTCGTTGGCCTAATTCCCCATGGCGGCTTCTACAGGTTTCTTGGGATGAACCAGATTTGCTGCATAATGTGAAGAGAGTGAGTCCCTGGTTGGTTGAGTTGGTATCAAACATGCCGTACATACACCTCTCACCCTTTTCTCCTCCCAGAAAGAAGATGCGCCCTTCACAACACGCAGACTTCACCCTCGATGGACAATTTCCTTGGCCACCAGTTTCAGGCAACCCCCTTGGGTCCATTAATCCATTGTTTTGTATATCCGACAACGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGAATATCTTTATCAGATTTCCACCTTGGCAACAAACAGCAGGTGGCACTGCTTCCATCTAGTCTCCAGCAGCTTGAAGTGGGTTCTAGAATTCCTAACTTAAATTTGGTAGGAGGTGGACGAAGTAAGGATAGCTTATCTTGCTTGCTGAAAGTTGGCAATTCCACTAAGAGCTTGGAGAAATCTGATGGTGTTAAGAGACATCAGTTTTTACTCTTCGGTCAACCGATTCTGACGGAGCAACAAATCTCTCGAAGCATTTCTAGTAATGCAGCATCTGAGAATTCTAAGGAAAAGAATGTGTCAGCTGAGAATAAAGAAAAGGAAATGTTTCTTTCTGGTGATTCAGTATCGACAGTTGAGAATCAGATTTCTCCTGGAAAATCTGCCAGTGCTGAATTTCTAGGTCAACACGGCTTCAATACTGGCCATTGTAAAGTATTTATGGAGTCAGAAGATTTGGGAAGGACACTGGATCTTTCACTACTTAGCTCCTATGAGGAGCTCTACATGAGGCTGGCCAACATGTTTGGAATAGATAGAGCTAAGATCTTGCGTCATGTGCTCTACCGAGACTCGATAGGTGCTGTAAAGCAGGCTGGTGATGAACCATACAGGTAA 1977 0.4512 MKEAEQSLDPQLWHACAGSMVQMPVVNSKVFYFPQGHAEHAQANVDFAASLRIPSLIRCRVAAVKFLADHETDEVYAKIKLIPLGNTEFDYDDDGVCGNNGSENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVMAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAESGDLCVGIRRTKRGMGGLDSPSGWNTGHGSCVGPYGPFSAFLRDAENKLLRNGCGNSGAGGANLRGKGKVRAESVMDAAALAASGQPFEVVYYPRASTPEFCVKEASVRGAMRIQWCSGMRFKMAFETEDSSRISWFMGTVTSVQVVDPIRWPNSPWRLLQVSWDEPDLLHNVKRVSPWLVELVSNMPYIHLSPFSPPRKKMRPSQHADFTLDGQFPWPPVSGNPLGSINPLFCISDNAPAGIQGARHAQFGISLSDFHLGNKQQVALLPSSLQQLEVGSRIPNLNLVGGGRSKDSLSCLLKVGNSTKSLEKSDGVKRHQFLLFGQPILTEQQISRSISSNAASENSKEKNVSAENKEKEMFLSGDSVSTVENQISPGKSASAEFLGQHGFNTGHCKVFMESEDLGRTLDLSLLSSYEELYMRLANMFGIDRAKILRHVLYRDSIGAVKQAGDEPYR* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00904 658 Gene3D - 109 212 IPR015300 -
Pte17g00904 658 Pfam Auxin response factor 279 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte17g00904 658 SMART B3_2 111 213 IPR003340 GO:0003677
Pte17g00904 658 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Pte17g00904 658 Gene3D - 317 389 - -
Pte17g00904 658 Gene3D - 592 658 - -
Pte17g00904 658 SUPERFAMILY DNA-binding pseudobarrel domain 105 214 IPR015300 -
Pte17g00904 658 FunFam Auxin response factor 109 213 - -
Pte17g00904 658 FunFam Auxin response factor 317 390 - -
Pte17g00904 658 ProSiteProfiles PB1 domain profile. 594 658 IPR000270 GO:0005515
Pte17g00904 658 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 657 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte17g00904 658 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Pte17g00904 658 CDD B3_DNA 110 211 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00904 Pte-Chr17 24166254 24170404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00904 4 657 B3 DNA Binding Superfamily AT4G30080 57.121 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte17g00904 B3 2.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00904 - - qsa:O6P43_028379 1040.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00904 17 24166254 24170404 Pte17g00904 17 24166254 24170404 RCT
Pte17g00904 17 24166254 24170404 Pte15g00455 15 3231573 3236078 RCT