Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00897 ATGGCGAAAGACGTCGAGGCTGCAGTAGAACAACCAGAGTTCTCTGCTAAAGACTACCATGACCCTCCTCCAGCTCCATTGATTGACTTTGATGAGCTGACAAAGTGGTCATTCTACAGAGCTTTGATCGCTGAGTTCATTGCCACCCTTCTCTTCCTCTACATCACAGTCTTAACTGTCATAGGATACAAACACCAAAGTGACACAGGCAATGGTGGTGACGTGTGTGGTGGAGTAGGCATCTTAGGTATTGCATGGGCTTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACCGCTGGTATCTCAGGAGGACACATAAACCCGGCAGTGACCTTCGGTTTGTTTTTGGGGAGGAAGGTTTCATTGATTAGGGCGTTGCTGTACATGGTAGCACAGTGTGCAGGTGCCATCTGCGGTTGTGGATTTGCAAAGGCTTTTCAGAAGGCATACTACAACAGGTACGGCGGTGGAGCCAACGAGCTTGCTGATGGATACAGCAAAGGAACTGGATTAGGTGCTGAGATCATCGGCACCTTTGTGCTTGTATACACAGTCTTCTCAGCCACTGATCCTAAGAGAAATGCCAGAGACTCACATGTTCCTGTTTTGGCACCACTCCCAATTGGATTTGCTGTGTTCATGGTTCATTTGGCTACCATCCCAGTTACTGGAACTGGCATCAACCCAGCAAGAAGTTTTGGAGCAGCTGTTATTTACAACAATGAAAAAGCCTGGGATGACCAGTGGATTTTCTGGGTTGGACCTTTTATTGGAGCCGCCATTGCTGCATTGTACCACCAATACGTTCTGAGAGCTGCTGCTATCAAAGCTCTAGGTTCCTTCAAGAGCAGTGCTTGA 861 0.4785 MAKDVEAAVEQPEFSAKDYHDPPPAPLIDFDELTKWSFYRALIAEFIATLLFLYITVLTVIGYKHQSDTGNGGDVCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCAGAICGCGFAKAFQKAYYNRYGGGANELADGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFIGAAIAALYHQYVLRAAAIKALGSFKSSA* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00897 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 9 275 IPR034294 -
Pte17g00897 286 FunFam Probable aquaporin PIP1-2 25 286 - -
Pte17g00897 286 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte17g00897 286 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte17g00897 286 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte17g00897 286 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte17g00897 286 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte17g00897 286 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte17g00897 286 CDD MIP 40 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte17g00897 286 Gene3D Glycerol uptake facilitator protein. 25 286 IPR023271 -
Pte17g00897 286 Pfam Major intrinsic protein 32 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte17g00897 286 SUPERFAMILY Aquaporin-like 32 272 IPR023271 -
Pte17g00897 286 NCBIfam MIP family channel protein 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte17g00897 286 ProSitePatterns MIP family signature. 106 114 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00897 Pte-Chr17 24077478 24078732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00897 1 286 Major Intrinsic Protein MIP AT2G37170 83.624 2.03e-176 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00897 K09872 - pvy:116105008 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00897 17 24077478 24078732 Pte17g00897 17 24077478 24078732 RCT
Pte17g00897 17 24077478 24078732 Pte15g00450 15 3181806 3182920 RCT
Pte18g01623 18 27656203 27657568 Pte17g00897 17 24077478 24078732 RCT
Pte15g01119 15 8381336 8383204 Pte17g00897 17 24077478 24078732 RCT