Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00892 ATGGTTCAAGAGAAAATGATACCCGAAGAAAAAAAGCTTGAGAGGCAGGCTTCTGCTTGTTGTGAAGGAATGGTTGCTGCTCCTCTTCCCGAGGCTGGTAGTACATCTGGAAATACTGAAGACTCCACACATATTCCCCCTTGGAAGAGACAGAATCTCTACTTAGATATTCCCCCGAGAACAGCAGAAGAGACCGGCCAGGATTTCGTTGCGATCAAGATGCCACCAGCACCGAGTCCTACCCCAACTCCAAAAAAAGTAAATTTTTGCCTTGAGGCAGGCCAGCATGCCGTTCCTTCCACTTGTTCTGCAGGGCAGCCTGCACCAAAAGGAAAACCATCCTTAAGGAATCTCTTACCAAAATTGAGCTTCAAATATGGGCCATCATCTGATATTGACAAGTCACCCCCAGCAGCTCCAGAAAATTCATCCTCAGCTCCAGAAGAGAAACTTTCCATATCGAGGTCATTGTCCCTTTCAAAAATATTTACTCCCATGATTTACAGAACATCATCTCTTCCGGTGACTCCAATTGCACAATCGAATCCAGAAGCTTCTCATGGAGGGTGTGTTGGTTTTTCTCTACATAAGAGAGAGACTCATGGCCATATGGCTCGTTCTCTTTCAGTTCCTCTCAACAACAAAGAACCAAGTATAAGGAGGACAAACTCATTTTTTCGTGTTGTTCCTTCAACTCCTCGAGTCAAGGAAGGAATTGACATGCCCAAGGCATCCCCTAAAAAGGATGAAGAAAACAATGATGCCAACGGCGAAGACATATCTGAAGAAGAGGCTGTGTGTAGAATTTGTATGGTTGAGCTATGTGAAGGAGGTGAGACATTTAAGCTGGAGTGCAGCTGTAAAGGTGAACTTGCTCTGGCACACCATGATTGTGTCATTAAATGGTTTAGCCTGAGGGGCAACAAGACCTGTGAAGTGTGCAAGCAGGAGGTTAGAAACCTACCTGTGACTCTCTTGCGAATCCAGAGTACCGAAATTCAAAATACTGGGGGTAGGTCTCTGCAGGAAGATGTAAATGGTTACAGGGTTTGGCAGGAAGTTCCTGTTCTCGTCATCATCAGCATGCTTGCCTACTTCTGTTTTCTTGAGCAATTACTGGTTGGGAAAATGAGTACAGGTGCAATAGCCATATCTCTTCCTTTTTCCTGTGTGCTAGGCCTGCTTTCATCCATGACATCGTCAACCATGGTGAAGAGCAGATTCATCTGGGTTTATGCGTCTATTCAGTTTGCGCTGGTGGTTCTATTTGCACATATCTTTTATACCTTGATCCGTGTGCAAGCAGTTTTGTCAATTCTTCTTGCAACATTTGCTGGATTTGGTGTTGCAATGAGTGGCAGTTCAATTATTGTTGAAATCTTGAGAATTAGACGAAGATTTCAGGTTTTATCTCAACAGGACCATGCTTCCCAACGACCGGGGCTACACCATGGAAATTTGAGCACACTCCGGGTAGGTCCTCCAGAGTCTCAGCACAGGACAACTCAAGATACAGGAACTTCAAGTGCGCCTTGA 1536 0.4492 MVQEKMIPEEKKLERQASACCEGMVAAPLPEAGSTSGNTEDSTHIPPWKRQNLYLDIPPRTAEETGQDFVAIKMPPAPSPTPTPKKVNFCLEAGQHAVPSTCSAGQPAPKGKPSLRNLLPKLSFKYGPSSDIDKSPPAAPENSSSAPEEKLSISRSLSLSKIFTPMIYRTSSLPVTPIAQSNPEASHGGCVGFSLHKRETHGHMARSLSVPLNNKEPSIRRTNSFFRVVPSTPRVKEGIDMPKASPKKDEENNDANGEDISEEEAVCRICMVELCEGGETFKLECSCKGELALAHHDCVIKWFSLRGNKTCEVCKQEVRNLPVTLLRIQSTEIQNTGGRSLQEDVNGYRVWQEVPVLVIISMLAYFCFLEQLLVGKMSTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWVYASIQFALVVLFAHIFYTLIRVQAVLSILLATFAGFGVAMSGSSIIVEILRIRRRFQVLSQQDHASQRPGLHHGNLSTLRVGPPESQHRTTQDTGTSSAP* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00892 511 CDD RING_CH-C4HC3_MARCH 267 315 - -
Pte17g00892 511 MobiDBLite consensus disorder prediction 475 511 - -
Pte17g00892 511 MobiDBLite consensus disorder prediction 136 151 - -
Pte17g00892 511 PANTHER OS02G0165000 PROTEIN 36 479 - -
Pte17g00892 511 Pfam RING-variant domain 267 314 IPR011016 GO:0008270
Pte17g00892 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 322 IPR013083 -
Pte17g00892 511 SMART ringv_2 266 315 IPR011016 GO:0008270
Pte17g00892 511 MobiDBLite consensus disorder prediction 240 254 - -
Pte17g00892 511 ProSiteProfiles Zinc finger RING-CH-type profile. 259 321 IPR011016 GO:0008270
Pte17g00892 511 MobiDBLite consensus disorder prediction 28 54 - -
Pte17g00892 511 MobiDBLite consensus disorder prediction 491 511 - -
Pte17g00892 511 MobiDBLite consensus disorder prediction 236 258 - -
Pte17g00892 511 SUPERFAMILY RING/U-box 263 318 - -
Pte17g00892 511 MobiDBLite consensus disorder prediction 32 46 - -
Pte17g00892 511 MobiDBLite consensus disorder prediction 100 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00892 Pte-Chr17 24039739 24044466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00892 193 331 C3H Transcription Factor Family AT2G37950 30.496 6.77e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00892 - - qsa:O6P43_028362 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00892 17 24039739 24044466 Pte17g00892 17 24039739 24044466 RCT