Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00880 ATGTTTGGCTTGAACTGTGTCATAGAAGAACTGCACTGCGTGTTAATGGAAATTGATCTGAACCATGCAGTGAGTGAGGTTGAAAAGAATGTAGCTTGCAGTGAGGATTGTGTGCAGGTGGATCGTGTTGGTAGTTTGTCATCATCAAATTCTTCAAACTCATCGTCAGCTCAAGTCTCTTCCTATTTGGAGCTCTGGCATGCTTGTGCTGGCCCTCTCACCTCACTGCCGAAGAAAGGGAATGCAGTGGTCTACTTCCCACAAGGTCACTTGGAACAAGTTGCTTCCTTTTCTCCATTCTCGCCAAGGGAGATGCCCACATACGATCTCCAACCGCAGATCTTTTGCAAGGTGGTCAATGTCCAGCTACTTGCGAATAAAGAGAATGATGAGGTTTATATGCAAGTCAGTTTGCTTCCTCAGCCTGAGTTGCGAAGTACGAATTTAGAAGGAAAAAAGATTGAAGAGTTGGTGCTGGATGACGAGGATGCTGAAGGATCGCCTTCTAAATCAAGTTCAACCCCCCATATGTTTTGCAAAACTCTCACAGCTTCTGACACCAGTACTCATGGGGGATTTTCTGTTCCTCGCAGAGCTGCTGAGGATTGCTTTCCACCTCTGGATTATAAGCTGCAGAGACCGTCACAGGAATTATTTGCCAAGGACCTGCATGGAACTGAATGGAGGTTTCGTCATATTTATAGGGGTCAACCAAGGCGTCATCTGCTGACTACTGGTTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGGGATGCAGTGCTGTTTCTGAGGGGAGAAAGTGGGGAGTTAAGGTTGGGCATCAGAAAAGTTATTCGACCAAAAACTTGCCTTCCCGATTATGTTGTCCGCAATCAAAGTTCCTATGTTGGCGTCCTTTCTTCTGTGCCCAGTGCAATAGCCAATAGGAGCGTTTTTGATGTCTTTTATACTCCAAGAGCAAGTCATGCAGAGTTTGTTGTGTCCTACCGGAAATACATCAAAAGCATTAGTAGCCCATTGACCATGGGAGCGAGATTCAAAATGAAATTTGAAAATGATGAATCTTCTGAGGGAAGGTCCAGTACTGGTGTAGTGAGAGGAATAGGTGATTTGGATCCCTACCGATGGCCTAAGTCAAAATGGAGGTGCTTGATGGTTGGATGGGATGACGATACTGCAATTAGTCATCCTGAACGAGTTTCCCCTTGGGAGATTGAATTTTCTGGCTCTTTGCCTCCATTGAGCATTCAGTCTTCTCCAAGACTGAAGAAACCGCGGATGGGACTTCAGTCTACCACACCCAAAAACCTCATCACTGGTGGTGGGTTTATGGACTCTGAGGAGTCTGTAAGATCCTCCAAGGTCTTGCAAGGTCAAGAAAACATAGGTTTATTGTCTCCCTGTTCTGGTGGTGATACAATAAATCGACAATTCAAGTTTGAAACTCCTTCTTCAACTCATCAAAATGTTGCATCGAATGGGATGAGGAAGGTTACCATTGAAGAATTCTCGAGGATTCATCCCTCCACATATGCAGGCTTTGCGGAAAGAAACAGAATTTCAAGGGTCTCTCAAGGTCAAGTCCCATTGAGATTCCTCTCGGACTCAAATAATTTCAACAGAGGTACTTGGTGCAAACCAAATTTTGGTGGCGCAACTTTCAATATGCATCAGGCACCACAGCTTGCATTTCAACCTACATCATCAAAAATCCTTCGAAGTATGTACATTTCTTATGGAGACATTCATAAAGTTAGTAACCAAAGCGCGTGCTCTGTCATTGACTTACATAGAGCAAATGAGCTCTCCAACCAAACAACTAATCCAGAAAAAATCACTGAAGTTGCCAAGTCAGATCATTCTGATGAGCAGGAGCTGCGGGAAGAAGGTTCTTCTAGTCCTTCTTTAGGGCTAAACTTGAGAATTCCAAACAAGGAGAGTTTCAATGTGAAGATGAATGGATGCAGACTTTTTGGGATTTCTTTGACTGAGGATACTTCCAATCTGCAAAACCCCACCAGGAGGAGTTGTACTAAGGTTCACAAACAAGGCAGTTTGGTCGGAAGAGCCATTGATCTCTCAAGACTCAACGGCTATGGGGATTTGTTGATTGAGCTGGAGCGATTGTTTGGTATGGAAGGCCTGCTGCAGAGTCCTGATAGAGGATGGCAGATCTTGTATACTGATAGTGAAAATGACATAATGGTTGTTGGAGACGACCCTTGGCATGAGTTCTGCAAGGTGGTCTCCAAAATCCACATATATACACAAGAAGAAGTGGAAAAGATGACCATCGGAATAATCAGTGATGATACTCAAAGCTGTTTGGAGCAGTCACCACTTACCATGGAAGCATCCAAGTCTTCCTCCGTGGGGCAACCAGACTCTTCCTCTACGGTGGTTAGGGTATAA 2418 0.4429 MFGLNCVIEELHCVLMEIDLNHAVSEVEKNVACSEDCVQVDRVGSLSSSNSSNSSSAQVSSYLELWHACAGPLTSLPKKGNAVVYFPQGHLEQVASFSPFSPREMPTYDLQPQIFCKVVNVQLLANKENDEVYMQVSLLPQPELRSTNLEGKKIEELVLDDEDAEGSPSKSSSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKLQRPSQELFAKDLHGTEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGESGELRLGIRKVIRPKTCLPDYVVRNQSSYVGVLSSVPSAIANRSVFDVFYTPRASHAEFVVSYRKYIKSISSPLTMGARFKMKFENDESSEGRSSTGVVRGIGDLDPYRWPKSKWRCLMVGWDDDTAISHPERVSPWEIEFSGSLPPLSIQSSPRLKKPRMGLQSTTPKNLITGGGFMDSEESVRSSKVLQGQENIGLLSPCSGGDTINRQFKFETPSSTHQNVASNGMRKVTIEEFSRIHPSTYAGFAERNRISRVSQGQVPLRFLSDSNNFNRGTWCKPNFGGATFNMHQAPQLAFQPTSSKILRSMYISYGDIHKVSNQSACSVIDLHRANELSNQTTNPEKITEVAKSDHSDEQELREEGSSSPSLGLNLRIPNKESFNVKMNGCRLFGISLTEDTSNLQNPTRRSCTKVHKQGSLVGRAIDLSRLNGYGDLLIELERLFGMEGLLQSPDRGWQILYTDSENDIMVVGDDPWHEFCKVVSKIHIYTQEEVEKMTIGIISDDTQSCLEQSPLTMEASKSSSVGQPDSSSTVVRV* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00880 805 Pfam B3 DNA binding domain 178 278 IPR003340 GO:0003677
Pte17g00880 805 MobiDBLite consensus disorder prediction 619 640 - -
Pte17g00880 805 MobiDBLite consensus disorder prediction 426 441 - -
Pte17g00880 805 FunFam Auxin response factor 672 766 - -
Pte17g00880 805 ProSiteProfiles B3 DNA-binding domain profile. 178 280 IPR003340 GO:0003677
Pte17g00880 805 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 61 766 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte17g00880 805 SMART B3_2 178 280 IPR003340 GO:0003677
Pte17g00880 805 Pfam Auxin response factor 306 386 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte17g00880 805 FunFam Auxin response factor 341 414 - -
Pte17g00880 805 MobiDBLite consensus disorder prediction 782 805 - -
Pte17g00880 805 FunFam Auxin response factor 176 280 - -
Pte17g00880 805 Pfam AUX/IAA family 678 761 IPR033389 -
Pte17g00880 805 Gene3D - 176 280 IPR015300 -
Pte17g00880 805 Gene3D - 673 766 - -
Pte17g00880 805 SUPERFAMILY CAD & PB1 domains 678 756 - -
Pte17g00880 805 MobiDBLite consensus disorder prediction 418 444 - -
Pte17g00880 805 Gene3D - 342 414 - -
Pte17g00880 805 CDD B3_DNA 176 278 IPR003340 GO:0003677
Pte17g00880 805 SUPERFAMILY DNA-binding pseudobarrel domain 170 296 IPR015300 -
Pte17g00880 805 ProSiteProfiles PB1 domain profile. 677 761 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00880 Pte-Chr17 23940495 23946155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00880 60 806 B3 DNA Binding Superfamily AT5G60450 56.992 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte17g00880 B3 1.5e-20 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00880 17 23940495 23946155 Pte17g00880 17 23940495 23946155 RCT