Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00872 ATGGAGTACAGTGAAACAAACACCAACTGCTCATCGAGCCCTCTTTCTCAATCTCCTTCTTCTCCTCCACCGTCAACTCCAGCTGCACCTCCACAAGTTATCATGAGCCCTTGTGCTGCTTGCAAGATTTTGAGGCGGAGATGTGCTGAAAAATGCGTGCTGGCACCTTATTTTCCTCCCACGGATCCGGCCAAGTTTACTATTGCTCATAGAGTTTTTGGCGCCAGCAACATCATCAAGTTTTTGCAGGAGCTTCCCGAGTCTCAAAGGGCCGATGCAGTGAGCAGCATGGTGTATGAGGCCAGTGCTAGGATAAGAGACCCAGTTTATGGGTGTGCAGGCGCCATTTGTCAGCTGCAGAAACAAGTTAGCGAGCTCCAAGTACAACTAGCTAAGGCACAAGCGGAAGTTGTCAACATGCAATTGCAGCATGCCAACCTCGTAGCTCTAATTTGCATGGAAATGGCACAAACTCCTCATCAAGATCAATCAGCACAAGAGCAGGCGTCACTCGATAATTACAATATATCAAGCCCAGCCCCAAACTACCAGAGCAACCTCCATTTCTTTGATGACAACAATAGCAACTTGAATGCGTTGTGGGAGTTGCCTTTATGGACATGA 624 0.4792 MEYSETNTNCSSSPLSQSPSSPPPSTPAAPPQVIMSPCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQVQLAKAQAEVVNMQLQHANLVALICMEMAQTPHQDQSAQEQASLDNYNISSPAPNYQSNLHFFDDNNSNLNALWELPLWT* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00872 207 ProSiteProfiles LOB domain profile. 36 137 IPR004883 -
Pte17g00872 207 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 36 168 - -
Pte17g00872 207 MobiDBLite consensus disorder prediction 1 30 - -
Pte17g00872 207 Pfam Lateral organ boundaries (LOB) domain 37 134 IPR004883 -
Pte17g00872 207 Coils Coil 116 143 - -
Pte17g00872 207 MobiDBLite consensus disorder prediction 1 16 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00872 Pte-Chr17 23849816 23851402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00872 32 207 AS2 family AT1G07900 67.797 1.09e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte17g00872 LOB 3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00872 - - gmx:100789504 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00872 17 23849816 23851402 Pte17g00872 17 23849816 23851402 RCT