Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00871 ATGGCGGAGTATACGGACAGTGTGGAATTCCAATCAATACTTCACCATCAACAGCAAGAATTCATGAGTGCCAAAACCCTAGACTCTGACTTAGATTTCGCCTTCCAACTCCAACTGCAGGAGGCTATGAACGCTTCCCTTGCTCTACAACCCTCAGATTCGTCGACTGCAGAGTCCAAAACCGGCACGGATGTTATGTCTACACATGGAGATCAAACTGACAGCGTTATCGATTTGGTGGCCACGCTTATGCTTGAAGACATGCAGAAGATTGCGCAGGAACTTCAGGTCAGGGAACAATGGCAAGCGGAGATGGGGAAAATGAGAGAAGATCTTGACCGTCGGATTTTTGATCAGAAATTCGCTACTGACATTTTTAACATGCCAGAGGACCAGTGGAAAGTTTATGGTGATAACTACCACAAACCTTACGAAACAGTGAGCTCTTCTACTGCTGCGTCATCATCCTCGTCGTCTCAGAGTCCATTTACTGAAACAGAGTTTTTTCGGTTGTATTTTAAGGGTTTAGTCAGTGAAGAACGACTGAGAGATATGAAAGTGGCTGTTGCTTCTCTTGGCATTGCCATTTGTGATTCAAAGGATCACATGATTTTTGAAGTCAGAAAACCATTGCAAGCAATTGGGCCTGAAGGAATGGCGCTCACCACCGAGCGTGCGGAGCTTCAGGCTTTGATTGAAGGGCTGAATACTGCTCTTTTGTTGGGCTTCAAAAAGCTTACATTTTTCTGCGATGACTATATGCTCTACCAATATGTTACTGGCAGACTCACTGCTAACAATAGCAAGCTTGCAACACTGGTGAATCAAGTGTTTCAGCTTCAAAGACAATTTGCTGCTTGCAATGCACATCTTGTTGGACGAAATGACATCAAGTTTGCATTCAAATCTGCCAGGGAAGCTATTATTTCCCAAATCACTTGGTCTGTGGACTCCAAAGGTAAAAAGACCTTGAAGGAGACATGTGTTATTTGTTTTGAAGACGTTGACGTTGATCACATGTTTTCAGTGGATTATTGCCTGCATAGATTTTGTTGTTCTTGTATGAAACAACACGCGGAGGTGAGGATGCTCAACGGAAAATTGGCAAATTGTCCTCATGAGAATTGTAATTCAGAGGTGACACTTGATAGTTGCAAAAAGTTTTTGGCTCCTCAGATTGTCCACGTCATGACACAACGCATTAGAGAATCTACTATTCCTGTTACAGAGAAGGTTTATTGTCCAAATCCCAAGTGCTCAGCATTAATGTCAACGCATGAGGTCTTAGAGTATACGAAAACAACATACATTACTGCCGAACAAAATGGAGTACGGCGATGCATGAGATGTAATTACTATTTTTGTATCAATTGTATGGTCCCTTGGCACTACAACATGACATGCAATGACTACCGAAGGTCCAATGCTTACCTCCAAGCAGAAGACGCAAAATTGAAGAACCTTGCTTCAAAAAAACATTGGCGACAATGTATCAAGTGCAAACATGTAATTGAACTTGCTGAAGGCTGTTATCACATCACATGCAGATGTGGTTATGAATTTTGTTACACTTGCGGAGAAGAGTGGAAAAATAAGAAAGCAACATGTAAATGTCCAATATGGGATGAGCGTAATATAATACGTCAAGGAAGACAGAGATGA 1662 0.4206 MAEYTDSVEFQSILHHQQQEFMSAKTLDSDLDFAFQLQLQEAMNASLALQPSDSSTAESKTGTDVMSTHGDQTDSVIDLVATLMLEDMQKIAQELQVREQWQAEMGKMREDLDRRIFDQKFATDIFNMPEDQWKVYGDNYHKPYETVSSSTAASSSSSSQSPFTETEFFRLYFKGLVSEERLRDMKVAVASLGIAICDSKDHMIFEVRKPLQAIGPEGMALTTERAELQALIEGLNTALLLGFKKLTFFCDDYMLYQYVTGRLTANNSKLATLVNQVFQLQRQFAACNAHLVGRNDIKFAFKSAREAIISQITWSVDSKGKKTLKETCVICFEDVDVDHMFSVDYCLHRFCCSCMKQHAEVRMLNGKLANCPHENCNSEVTLDSCKKFLAPQIVHVMTQRIRESTIPVTEKVYCPNPKCSALMSTHEVLEYTKTTYITAEQNGVRRCMRCNYYFCINCMVPWHYNMTCNDYRRSNAYLQAEDAKLKNLASKKHWRQCIKCKHVIELAEGCYHITCRCGYEFCYTCGEEWKNKKATCKCPIWDERNIIRQGRQR* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00871 553 SUPERFAMILY RING/U-box 326 408 - -
Pte17g00871 553 ProSiteProfiles Zinc finger RING-type profile. 328 372 IPR001841 -
Pte17g00871 553 CDD Rcat_RBR_unk 493 529 - -
Pte17g00871 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 405 IPR013083 -
Pte17g00871 553 SUPERFAMILY Ribonuclease H-like 217 294 IPR012337 -
Pte17g00871 553 Gene3D - 466 553 - -
Pte17g00871 553 FunFam RBR-type E3 ubiquitin transferase 466 553 - -
Pte17g00871 553 ProSiteProfiles TRIAD supradomain profile. 324 542 IPR044066 -
Pte17g00871 553 Pfam Reverse transcriptase-like 189 307 IPR002156 GO:0003676|GO:0004523
Pte17g00871 553 SUPERFAMILY RING/U-box 483 545 - -
Pte17g00871 553 Gene3D - 172 313 IPR036397 GO:0003676
Pte17g00871 553 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 111 538 IPR031127 GO:0004842|GO:0016567
Pte17g00871 553 ProSitePatterns Zinc finger RING-type signature. 346 355 IPR017907 -
Pte17g00871 553 CDD BRcat_RBR_unk 408 471 - -
Pte17g00871 553 SMART ibrneu5 398 468 IPR002867 GO:0008270
Pte17g00871 553 SMART ibrneu5 481 538 IPR002867 GO:0008270
Pte17g00871 553 FunFam RBR-type E3 ubiquitin transferase 323 408 - -
Pte17g00871 553 FunFam RBR-type E3 ubiquitin transferase 169 311 - -
Pte17g00871 553 MobiDBLite consensus disorder prediction 48 69 - -
Pte17g00871 553 Pfam IBR domain, a half RING-finger domain 410 468 IPR002867 GO:0008270
Pte17g00871 553 Pfam IBR domain, a half RING-finger domain 481 536 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00871 Pte-Chr17 23837447 23842048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00871 157 526 C3H Transcription Factor Family AT2G19610 38.070 1.26e-87 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00871 - - qsa:O6P43_000295 774.237