Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00866 ATGGGAATCACACATCTGGGACTGCGGGAAACAAGTCTATTTAGGTATGCAAATTTGAGATCAAGGAAAGGTTTCGAGTTACATTCTGTTATTTTGGAGTTTTCTATAATCTGGTTATGTTTAACATATTCTCTTTTTGATAACCCTGCTCTTTTGGGGTTTGTAGGTGGGTTTGACACTGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCCATAAAGTTCAGGGGAGTAGATGCTGACATCAATTTCGATCTCAGTGATTATGAGGAGGATATGAAACAGATGAAAAATCTTACGAAAGAGGAATTCGTGCACATACTGCGACGCCAGAGTACTGGTTTCTCGAGAGGCAGCTCCAAATATAGAGGAGTGACACTGCACAAATGTGGGAGATGGGAAGCTCGAATGGGCCAATTCCTTGGCAAAAAGTATTTATATCTTGGACTGTTCGACAACGAGGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGCAACGGGAGGGAGGCAGTGACTAACTTCGAGCCAAGTACATACGGAGAGGTGAAACCAGACAAATATAATGAAGGTAATAAAGATTATCTCGACCTAAATCTGGGTATCTCTATACCATCAATTGGCAATGATCGCAAGGATAACAGGAGTCATATTAAATTCCAATCTGGCGCTTGCGACATTCAGAGTGGAAGTAGTTCAAGGATGGAAACTAGAACCAACTCATTGGGAGTTGATATGCCTTTCGGAGGTCTTGTAGTTAGAGAAGGACATTCCCCTTTGTGGAATAGTGTTTACCCGAGGCTCTTTCCTCATGAGGAAAAAGCAGGGGAGAGAATTAGTATGGAGTGTTCACAAGGACTTCCGAGCTGGGCTTGGCAAAAGCACGGCCAGGGCACTTTTGCCTCTGTGTCACCGGTCTCTACTGCAGCATCATCAGGATTCTCATTTACGGCTCCCTTTCCTTCAAATTCTGTCGTTCAAGCGAAATCTGTGCAGGCAACAGCTTACAATCTCTGTTTCGCTTCGTCCAACACACCTGCTACTACCTCCTCGCACAATTACTTCATTTCGAAACCATCCCACGCACCTACCTAG 1101 0.445 MGITHLGLRETSLFRYANLRSRKGFELHSVILEFSIIWLCLTYSLFDNPALLGFVGGFDTAHAAARAYDRAAIKFRGVDADINFDLSDYEEDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYLYLGLFDNEVEAARAYDKAAIKCNGREAVTNFEPSTYGEVKPDKYNEGNKDYLDLNLGISIPSIGNDRKDNRSHIKFQSGACDIQSGSSSRMETRTNSLGVDMPFGGLVVREGHSPLWNSVYPRLFPHEEKAGERISMECSQGLPSWAWQKHGQGTFASVSPVSTAASSGFSFTAPFPSNSVVQAKSVQATAYNLCFASSNTPATTSSHNYFISKPSHAPT* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00866 366 FunFam AP2-like ethylene-responsive transcription factor 120 180 - -
Pte17g00866 366 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
Pte17g00866 366 SUPERFAMILY DNA-binding domain 120 179 IPR016177 GO:0003677
Pte17g00866 366 Gene3D AP2/ERF domain 120 179 IPR036955 GO:0003700|GO:0006355
Pte17g00866 366 Gene3D AP2/ERF domain 52 87 IPR036955 GO:0003700|GO:0006355
Pte17g00866 366 SUPERFAMILY DNA-binding domain 54 86 IPR016177 GO:0003677
Pte17g00866 366 ProSiteProfiles AP2/ERF domain profile. 15 85 IPR001471 GO:0003700|GO:0006355
Pte17g00866 366 SMART rav1_2 53 91 IPR001471 GO:0003700|GO:0006355
Pte17g00866 366 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
Pte17g00866 366 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 56 268 - -
Pte17g00866 366 Pfam AP2 domain 120 170 IPR001471 GO:0003700|GO:0006355
Pte17g00866 366 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Pte17g00866 366 PRINTS Ethylene responsive element binding protein signature 160 180 IPR001471 GO:0003700|GO:0006355
Pte17g00866 366 CDD AP2 120 180 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00866 Pte-Chr17 23787531 23791246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00866 54 208 AP2-EREBP Transcription Factor Family AT4G36920 76.250 1.86e-69 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte17g00866 AP2 1.2e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00866 K09284 - qsu:111994238 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00866 17 23787531 23791246 Pte17g00866 17 23787531 23791246 RCT
Pte17g00866 17 23787531 23791246 Pte15g00428 15 3011897 3014549 RCT