Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00854 ATGGCTCCGAAAGCTGATAGTGCAAAAAAGGCCGACCCAAAGGCTCAAGCCTTAAAAGCTGCTAAGGCAATTAAATCAGGTCCAGTTATCAGAAAGAAGGTTAAGAAGATGAGAACTTCTGTCACTTTCCATCGCCCCCGAACATTGAAGAAGGATAGAAATCCAAAGTATCCCCGCATCAGTGCTCCTCCGAGGAATAAGCTCGATCATTATCAGATTTTGAAGTTCCCGTTGACTACTGAATCTGCAATGAAGAAAATTGAAGATAACAACACTTTGGTTTTCATTGTTGACTTGCGTGCTGATAAGAAAAAGATCAAGGACGCTGTTAAGAAGATGTATGATATTCAGGCGAAGAAAGTAAACACCTTGATCAGGCCTGACGGAACCAAGAAGGCATATGTTAGATTAGCCCCAGATTATGATGCCTTGGATGTTGCAAACAAAATTGGAATTATCTAA 462 0.4091 MAPKADSAKKADPKAQALKAAKAIKSGPVIRKKVKKMRTSVTFHRPRTLKKDRNPKYPRISAPPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLAPDYDALDVANKIGII* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00854 153 Gene3D - 34 153 IPR012677 -
Pte17g00854 153 PANTHER 60S RIBOSOMAL PROTEIN L23A 6 153 IPR013025 GO:0003735|GO:0005840|GO:0006412
Pte17g00854 153 FunFam 60S ribosomal protein L23a 33 153 - -
Pte17g00854 153 MobiDBLite consensus disorder prediction 1 22 - -
Pte17g00854 153 Pfam Ribosomal protein L23 73 136 IPR013025 GO:0003735|GO:0005840|GO:0006412
Pte17g00854 153 MobiDBLite consensus disorder prediction 1 16 - -
Pte17g00854 153 NCBIfam 50S ribosomal protein L23 77 153 IPR019985 GO:0003735|GO:0005840|GO:0006412
Pte17g00854 153 ProSitePatterns Ribosomal protein L23 signature. 131 146 IPR001014 GO:0019843
Pte17g00854 153 MobiDBLite consensus disorder prediction 35 64 - -
Pte17g00854 153 Pfam Ribosomal protein L23, N-terminal domain 14 63 IPR005633 -
Pte17g00854 153 Hamap 50S ribosomal protein L23 [rplW]. 73 153 IPR013025 GO:0003735|GO:0005840|GO:0006412
Pte17g00854 153 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 70 146 IPR012678 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00854 Pte-Chr17 23633704 23636113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00854 26 154 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 86.047 3.54e-65 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00854 K02893 - egr:104422518 256.529