Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte17g00846 | ATGTCGGCGGCATTAGATATGAGCTTAGATGACATAATTAAGAGCAACAAGAAGTCCGGATCTGGAAACTCCAGAGGTCGTGGCCGAGGATCCGGATCCGGACCAACGCGTCGGTTCACAAATCGTGCAGCCAATCGTGCTGCACCATATGCAACCGCCAAGGCGCCGGAGTCTACTTGGCAGCACGATATGTATGCGGATCAGCTACCCATGGCGTATCCAGCACAAGGTGGACGAGCTTCATCCATAGAGACCGGAACCAAGCTCTACATCTCTAATTTGGAGTATGGCGTTTCCAATGAAGATATTAAGGAGTTGTTTTCTGAAGTTGGGGACCTCAAACGATATTCCATCCATTATGACAGGAGTGGGAGATCAAAGGGAACAGCAGAGGTTGTCTTCTCAAGGCGATCAGATGCTGTAGCTGCAGTGAAGAGATACAATAATGTTCAACTTGATGGAAAACCAATGAAAATAGAGATAGTTGGAACAAACATCACCACACCTGCTACTACTCCTTTTGGAAGTGGTGCTTTTGGAAATTTAAACGGACTTCCCATAGGCAGTGGTCTAGGTGGTCTAGGAGGTAGAGGTGGGCCACTTGGAAGACAACGCGGTGGTAGTGCTAGAGGGCGTGGCACAAGAGGACGTGGAAGAGGAAGAGGGCGTGGTGAAAAGGTGTCTGCTGATGCTCTTGATGCCGAGCTAGAAAAGTATCATGCAGAAGCAATGCAGACAAACTAA | 744 | 0.4852 | MSAALDMSLDDIIKSNKKSGSGNSRGRGRGSGSGPTRRFTNRAANRAAPYATAKAPESTWQHDMYADQLPMAYPAQGGRASSIETGTKLYISNLEYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVFSRRSDAVAAVKRYNNVQLDGKPMKIEIVGTNITTPATTPFGSGAFGNLNGLPIGSGLGGLGGRGGPLGRQRGGSARGRGTRGRGRGRGRGEKVSADALDAELEKYHAEAMQTN* | 248 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte17g00846 | 247 | Gene3D | - | 73 | 230 | IPR012677 | - | |
Pte17g00846 | 247 | Pfam | C-terminal duplication domain of Friend of PRMT1 | 195 | 242 | IPR025715 | - | |
Pte17g00846 | 247 | FunFam | THO complex subunit 4 | 80 | 229 | - | - | |
Pte17g00846 | 247 | SUPERFAMILY | RNA-binding domain, RBD | 60 | 186 | IPR035979 | GO:0003676 | |
Pte17g00846 | 247 | PANTHER | RNA AND EXPORT FACTOR BINDING PROTEIN | 5 | 245 | - | - | |
Pte17g00846 | 247 | CDD | RRM_THOC4 | 87 | 161 | - | - | |
Pte17g00846 | 247 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 87 | 164 | IPR000504 | GO:0003723 | |
Pte17g00846 | 247 | MobiDBLite | consensus disorder prediction | 14 | 40 | - | - | |
Pte17g00846 | 247 | MobiDBLite | consensus disorder prediction | 194 | 233 | - | - | |
Pte17g00846 | 247 | SMART | FoP_duplication_2 | 175 | 247 | IPR025715 | - | |
Pte17g00846 | 247 | MobiDBLite | consensus disorder prediction | 218 | 233 | - | - | |
Pte17g00846 | 247 | Coils | Coil | 229 | 247 | - | - | |
Pte17g00846 | 247 | SMART | rrm1_1 | 88 | 160 | IPR000504 | GO:0003723 | |
Pte17g00846 | 247 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
Pte17g00846 | 247 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 89 | 157 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte17g00846 | Pte-Chr17 | 23535838 | 23539409 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte17g00846 | 86 | 161 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 35.526 | 4.95e-09 | 54.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte17g00846 | K12881 | - | gmx:100817317 | 284.648 |