Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00846 ATGTCGGCGGCATTAGATATGAGCTTAGATGACATAATTAAGAGCAACAAGAAGTCCGGATCTGGAAACTCCAGAGGTCGTGGCCGAGGATCCGGATCCGGACCAACGCGTCGGTTCACAAATCGTGCAGCCAATCGTGCTGCACCATATGCAACCGCCAAGGCGCCGGAGTCTACTTGGCAGCACGATATGTATGCGGATCAGCTACCCATGGCGTATCCAGCACAAGGTGGACGAGCTTCATCCATAGAGACCGGAACCAAGCTCTACATCTCTAATTTGGAGTATGGCGTTTCCAATGAAGATATTAAGGAGTTGTTTTCTGAAGTTGGGGACCTCAAACGATATTCCATCCATTATGACAGGAGTGGGAGATCAAAGGGAACAGCAGAGGTTGTCTTCTCAAGGCGATCAGATGCTGTAGCTGCAGTGAAGAGATACAATAATGTTCAACTTGATGGAAAACCAATGAAAATAGAGATAGTTGGAACAAACATCACCACACCTGCTACTACTCCTTTTGGAAGTGGTGCTTTTGGAAATTTAAACGGACTTCCCATAGGCAGTGGTCTAGGTGGTCTAGGAGGTAGAGGTGGGCCACTTGGAAGACAACGCGGTGGTAGTGCTAGAGGGCGTGGCACAAGAGGACGTGGAAGAGGAAGAGGGCGTGGTGAAAAGGTGTCTGCTGATGCTCTTGATGCCGAGCTAGAAAAGTATCATGCAGAAGCAATGCAGACAAACTAA 744 0.4852 MSAALDMSLDDIIKSNKKSGSGNSRGRGRGSGSGPTRRFTNRAANRAAPYATAKAPESTWQHDMYADQLPMAYPAQGGRASSIETGTKLYISNLEYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVFSRRSDAVAAVKRYNNVQLDGKPMKIEIVGTNITTPATTPFGSGAFGNLNGLPIGSGLGGLGGRGGPLGRQRGGSARGRGTRGRGRGRGRGEKVSADALDAELEKYHAEAMQTN* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00846 247 Gene3D - 73 230 IPR012677 -
Pte17g00846 247 Pfam C-terminal duplication domain of Friend of PRMT1 195 242 IPR025715 -
Pte17g00846 247 FunFam THO complex subunit 4 80 229 - -
Pte17g00846 247 SUPERFAMILY RNA-binding domain, RBD 60 186 IPR035979 GO:0003676
Pte17g00846 247 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 245 - -
Pte17g00846 247 CDD RRM_THOC4 87 161 - -
Pte17g00846 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Pte17g00846 247 MobiDBLite consensus disorder prediction 14 40 - -
Pte17g00846 247 MobiDBLite consensus disorder prediction 194 233 - -
Pte17g00846 247 SMART FoP_duplication_2 175 247 IPR025715 -
Pte17g00846 247 MobiDBLite consensus disorder prediction 218 233 - -
Pte17g00846 247 Coils Coil 229 247 - -
Pte17g00846 247 SMART rrm1_1 88 160 IPR000504 GO:0003723
Pte17g00846 247 MobiDBLite consensus disorder prediction 1 57 - -
Pte17g00846 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00846 Pte-Chr17 23535838 23539409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00846 86 161 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 4.95e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00846 K12881 - gmx:100817317 284.648