Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00839 ATGGAGGGTGATCATAATAAAGTGGAGACCATGAATGGATCGAATGATGGCAGTACTCCAGCTAGTTCACGTTGGAATCCGACGAAAGAGCAGATAAGCGTGCTAGAGAGCTTGTACATGCAAGGCATAAGGACTCCAAGTGCGGAGCAAATCCAACAGATCACTGCAAGGCTGAGAGCGTTTGGTCACATTGAAGGCAAGAATGTCTTCTACTGGTTTCAAAACCACAAAGCCAGGCAGAGGCAAAAGCAGAAACAAGAGAACATGGCTTATTTCAATCGCTTGATCCATATGTCTCAGCCCCTACCTGTCTTCCCTACGCCACCTTGTCCTTACCCTAATGTGCTTTGCGCTCCGTGTTACCTTCCCCACAATGATATGGCCATTTGTCCACCCTATCCAAAGGTGCTTTTACCCGGTGGCGTCAGAAGAAAACCAAGGATTGCAGATAAAGTATACGAGAAGCCAGGGATTAGTGGAGATGGTCGCCATGGATATGAACATCTGCACCAAGGAGAGAAGACTTTGCCTCTTTTTCCTTTGCACCCAACAGGTGTCTTACAAGGGAAAGAAATGGGGCAAGTGTCTAATATGAATACAGCTGCATCTACAAGTACATCTTCCAATGCCATAGCACGTAGCTCACACGAGATCTATCAAGAAAATGCGAGTGGCCATTTTGCCGAGCAAAATTTCATCGATTTTTTTTCTTTGTGA 717 0.4575 MEGDHNKVETMNGSNDGSTPASSRWNPTKEQISVLESLYMQGIRTPSAEQIQQITARLRAFGHIEGKNVFYWFQNHKARQRQKQKQENMAYFNRLIHMSQPLPVFPTPPCPYPNVLCAPCYLPHNDMAICPPYPKVLLPGGVRRKPRIADKVYEKPGISGDGRHGYEHLHQGEKTLPLFPLHPTGVLQGKEMGQVSNMNTAASTSTSSNAIARSSHEIYQENASGHFAEQNFIDFFSL* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00839 238 MobiDBLite consensus disorder prediction 1 26 - -
Pte17g00839 238 Pfam Homeodomain 22 82 IPR001356 GO:0003677
Pte17g00839 238 SMART HOX_1 20 87 IPR001356 GO:0003677
Pte17g00839 238 FunFam WUSCHEL-related homeobox 4 22 89 - -
Pte17g00839 238 SUPERFAMILY Homeodomain-like 22 89 IPR009057 -
Pte17g00839 238 CDD homeodomain 24 84 IPR001356 GO:0003677
Pte17g00839 238 MobiDBLite consensus disorder prediction 10 26 - -
Pte17g00839 238 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 9 211 IPR044555 GO:0003700|GO:0099402
Pte17g00839 238 Gene3D - 6 97 - -
Pte17g00839 238 ProSiteProfiles 'Homeobox' domain profile. 18 83 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00839 Pte-Chr17 23269039 23270160 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00839 11 237 Wox Gene Family AT5G59340 41.353 4.56e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pte17g00839 Homeodomain 4.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00839 - - vvi:100263784 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00839 17 23269039 23270160 Pte17g00839 17 23269039 23270160 RCT