Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00835 ATGGAAGAAGAGAAAGGTGCACTAGCTCAAATTCTAATCGACGAGGTGCACGAGATAGCTGCTATCTCTGATTACAGATGTACGGTAAAGAAGCAATATTGTAATTTAGCTAGAAGATTGAAGCTGTTAATTCCAATGTTTGAAGAGATTAGGGATGGCAGAGAAGTTCTCCCTCACTCCACTTTGAAAGCTTTGGTTTCATTCAAACGAGCTCTCGAATCAGCTAAGGAGGTGCTTAGGGTCGGAAGTGAAGGCAGCAAGATTTACCTGGTTTTGGAGAGGGAGCAGATTATGGACAAGTTTCATGATGTGTGCCATAAGTTGGAACAAGCTTTACGTGATATTTCACATGATAAACTTGATATATCTGATGAAGTCAAAGAGCAGGTTGAGCTTGTGCTTGCTCAGTTCAGAAGAGCCAAAGGAAGGATTGAACCTCCTGATACTGAGCTTTATGAGGACCTGTTATCCCTTTACAGCCAGAGCAGTGGTTCAGCTACGAATCCGGCTACCATAAGAAGATTGGCTGAAAAACTACAGTTAACTGCGATAAGTGATTTAACGCAAGAGTCAATTGCTCTGCATGAGATGGTTGCTTCTAGTGGTGATGATCCGGGCAAAAGCATTGAAATGATGTCAATGTCGCTAAAGAAGATAAAAGATTTTGTGCAAACAGAAATCCCAGATATGGATGCTGCTGATAATGGTAAAGAGCTTTCGTCTAGTTGCAACAAACAAGGAACTGATGAAAAGCATCATCAGACCCTAGTTATTCCAGATGATTTTAGGTGTCCTATATCTTTGGAATTGATGAAGGACCCTGTAATTGTTTCAACTGGACAGACTTATGAGCGTTCCTGCATGGAGAAGTGGTTAGAAGCAGGGCATGCGACATGTCCAAAAACACAACAGGCTCTGTCTAGCACTACCCTTACACCAAACTACGTCTTAAGAAGCCTCATCGTTCAGTGGTGTGAAGCAAATGGCATAGAACCACCTAAAAGGCCGAGTAGTTTACGCCCTAGTAGATCTGCATCTTCGTCCTTAGCTGCTGACCGTAGTCAAGTTGAAACTCTTATTCGCAAATTGACATCTGGAAATCCTGAAGACCAAAGATCTGCTGCTGGTGAGATCCGCCTTCTAGCCAAGCGCAATGCAGGTAATCGTGTGGCCATTGCTGAAGCTGGTGCAATTCGTCTCCTAGTTGATCTGCTTTCAGCACCTGACTCTCGTACACAAGAGCATGCAGTTACTGCACTTCTAAATCTTTCAATATGTGAGCATAACAAGGGAAGTATCATATCCTCTGGGGCAGTTCCTGGAATAGTTCATGTGTTGAAGAATGGGAGCATGGAGGCACGCGAAAATGCAGCTGCGGCCCTGTTTAGTCTGTCTGTTGTAGACGAAAATAAAGTCACAATTGGTTCTTCCGGAGCAATTCCACCTCTTGTAACACTTCTAAGTGAAGGTACCCAACGAGGTAAGAAGGATGCTGCAACAGCACTCTTCAATTTGTGCATCTACCAAGGTAATAAAGGAAAAGCAGTGAGAGCTGGTGCTGTCCCAACACTGATGCGTATCCTAACAGAACCTGCAGGAGGAATGGTAGACGAAGCATTGGCAATTCTGGCAATACTATCTAGCCACCCAGAAGGGAAGACTGCCATTGGAGCTGCGGAGGCTGTACCAGTTTTGGTCGATGTTATAGGAAATGGATCTCCAAGGAACAAAGAGAATGCAGCAGCTGTATTGGTTCATCTTTGTTCAGCAGATACGCAGTACCTAAAAAAGTCCCATGAACTAGGGGTGATGGGTTCGTTGGTTGATATATCACAAAATGGCACCGAACGAGGTAAACGAAAGGCTGCACAGTTGCTAGATCGATTGAATAGGTTTCTTCAGCAGCAGCTGCCTCAGGGACAAGCTCAGTTGCAACCACAGGACCAAGAGTCACGACTATCTTCCACGACTATTGTTAACTGA 1983 0.4428 MEEEKGALAQILIDEVHEIAAISDYRCTVKKQYCNLARRLKLLIPMFEEIRDGREVLPHSTLKALVSFKRALESAKEVLRVGSEGSKIYLVLEREQIMDKFHDVCHKLEQALRDISHDKLDISDEVKEQVELVLAQFRRAKGRIEPPDTELYEDLLSLYSQSSGSATNPATIRRLAEKLQLTAISDLTQESIALHEMVASSGDDPGKSIEMMSMSLKKIKDFVQTEIPDMDAADNGKELSSSCNKQGTDEKHHQTLVIPDDFRCPISLELMKDPVIVSTGQTYERSCMEKWLEAGHATCPKTQQALSSTTLTPNYVLRSLIVQWCEANGIEPPKRPSSLRPSRSASSSLAADRSQVETLIRKLTSGNPEDQRSAAGEIRLLAKRNAGNRVAIAEAGAIRLLVDLLSAPDSRTQEHAVTALLNLSICEHNKGSIISSGAVPGIVHVLKNGSMEARENAAAALFSLSVVDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGAVPTLMRILTEPAGGMVDEALAILAILSSHPEGKTAIGAAEAVPVLVDVIGNGSPRNKENAAAVLVHLCSADTQYLKKSHELGVMGSLVDISQNGTERGKRKAAQLLDRLNRFLQQQLPQGQAQLQPQDQESRLSSTTIVN* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00835 660 MobiDBLite consensus disorder prediction 339 353 - -
Pte17g00835 660 FunFam RING-type E3 ubiquitin transferase 5 118 - -
Pte17g00835 660 Gene3D - 8 118 IPR036537 GO:0007166
Pte17g00835 660 Pfam Neurochondrin 511 636 IPR008709 -
Pte17g00835 660 SUPERFAMILY RING/U-box 250 334 - -
Pte17g00835 660 MobiDBLite consensus disorder prediction 233 252 - -
Pte17g00835 660 MobiDBLite consensus disorder prediction 332 353 - -
Pte17g00835 660 SMART arm_5 467 507 IPR000225 GO:0005515
Pte17g00835 660 SMART arm_5 549 589 IPR000225 GO:0005515
Pte17g00835 660 SMART arm_5 426 466 IPR000225 GO:0005515
Pte17g00835 660 SMART arm_5 508 548 IPR000225 GO:0005515
Pte17g00835 660 SMART arm_5 385 425 IPR000225 GO:0005515
Pte17g00835 660 PANTHER U BOX DOMAIN-CONTAINING 30 632 - -
Pte17g00835 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 331 IPR013083 -
Pte17g00835 660 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Pte17g00835 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 478 520 IPR000225 GO:0005515
Pte17g00835 660 Gene3D - 337 657 IPR011989 -
Pte17g00835 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 437 479 IPR000225 GO:0005515
Pte17g00835 660 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Pte17g00835 660 SUPERFAMILY ARM repeat 355 629 IPR016024 -
Pte17g00835 660 CDD RING-Ubox_PUB 259 311 IPR045210 -
Pte17g00835 660 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515
Pte17g00835 660 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515
Pte17g00835 660 Pfam Armadillo/beta-catenin-like repeat 427 465 IPR000225 GO:0005515
Pte17g00835 660 FunFam RING-type E3 ubiquitin transferase 340 635 - -
Pte17g00835 660 Pfam U-box domain 258 328 IPR003613 GO:0004842|GO:0016567
Pte17g00835 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Pte17g00835 660 CDD MLKL_NTD 30 138 - -
Pte17g00835 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Pte17g00835 660 FunFam RING-type E3 ubiquitin transferase 258 331 - -
Pte17g00835 660 MobiDBLite consensus disorder prediction 638 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00835 Pte-Chr17 23149057 23154446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00835 1 657 U-box Gene Family AT3G46510 67.171 0.0 886
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00835 - - qsa:O6P43_000217 970.304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00835 17 23149057 23154446 Pte17g00835 17 23149057 23154446 RCT