Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00810 ATGACAGATCCCTACTACAATTATTCTTATTCCTATGGTTGGTTCAACACCAATACCCACTACTGTTCTTCTTCCAATCCATTTTTCCAGTTTCCTGCTGATCATTATGGCTTCACAAATTGCACCAATAAAACCTCTTTAGCTCTCAGTCAGTTTTCACCTCCATCTTCTCCTCTGAAAGAAGCCCTCCCCCTCCTCAATCTATGTCCAACAAACGAGCATACGGAATTTTCCTCCAGTGCAATGGAAGCAAACAACATGGACAAAGAAATCATCTCATTTTCTGGCTTTGCTGCTGCTGCTGAAGATTATAACAGTGAAACTGTTTCAGTGGCATTATGTTTAGGACCACCATCTCCAAGTTCAGCTGATTTAGTTTCTAGCCTCTCCTCCACAGAGATCTCCGGCAAGGAAGAAGTGACCTTAGCTTCTAGCTACCCTTCAAACCGAATCCATTGGATACCGACCCCAGCTCAGATTTTAATAGGTCCTACACAGTTCTCATGCCCTCTTTGCTTCAAGACCTTCAACCGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGGAAGGGGCCAGAGTCTCTGAGGGGAACGCAACCCACCGCAATGCTTAGACTCCCTTGCTATTGCTGTGCGCCTGGATGCAAGAACAACATTGACCATCCAAGGTCCAAACCACTCAAAGACTTCAGAACCCTTCAGACACATTACAAGAGGAAGCATGGGATCAAGCCTTTCATGTGTAGAAAATGTTGCAAGGCATTTGCTGTCAGAGGTGATTGGAGAACCCATGAAAAGAATTGTGGCAAGCTCTGGTACTGCGCATGTGGATCAGACTTTAAGCATAAGAGGTCTCTCAAAGATCATATCAAGGCATTTGGAAATGGCCATGCAGCTTATGGCATTGACAGTTTTGAAGAAGATGATGACGAAGCAAGTTCAGAATTACTTTAG 969 0.4417 MTDPYYNYSYSYGWFNTNTHYCSSSNPFFQFPADHYGFTNCTNKTSLALSQFSPPSSPLKEALPLLNLCPTNEHTEFSSSAMEANNMDKEIISFSGFAAAAEDYNSETVSVALCLGPPSPSSADLVSSLSSTEISGKEEVTLASSYPSNRIHWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCACGSDFKHKRSLKDHIKAFGNGHAAYGIDSFEEDDDEASSELL* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00810 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 194 IPR013087 -
Pte17g00810 322 PANTHER ZINC FINGER PROTEIN WIP2 32 318 IPR043584 GO:0003700|GO:0010468
Pte17g00810 322 FunFam Zinc finger protein WIP2 220 302 - -
Pte17g00810 322 SUPERFAMILY beta-beta-alpha zinc fingers 232 271 IPR036236 -
Pte17g00810 322 Gene3D Classic Zinc Finger 166 189 - -
Pte17g00810 322 ProSitePatterns Zinc finger C2H2 type domain signature. 169 189 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00810 Pte-Chr17 22809192 22811501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00810 1 318 C2H2 Transcription Factor Family AT3G57670 54.377 4.30e-123 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte17g00810 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00810 - - qsa:O6P43_000130 457.603