Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00786 ATGAACCCAGATGTTCCGTCGACGCTGACGGGGTCGTATTGGTGTTACAGATGCACACGAATCCTTCGTCTGTGGATCAACCCTGACGAAATTGCTTGCCCGTATTGTGGCAGTGGTTTCATCGAAGAGTTAGAGAGCGGCTCATCGGCCGTAGCTCAAGGCAGTCCGTTTCCAGCTCCTACATCAACAGCGATGCTCGGTGATGGAGTTCGAAATTCTTATATCGACGGTAGGAGGCAAAACATTCGAAGACGGCGGAACGCGGTGGACCGGTCCCCGTTTAATCCTGTCATCGTTTTCCGTGGACCTAGTGATGATGTTCTAGATGGTGAAAGAAGTAACTTTGAGCTGTATTATGATGATGGTGAAGGCACTGGACTCCGTCCACTTCCACCTTCGGTGTCTGAGTTCTTGATGGGGTCGGGTTTCGATAGGCTGTTGGAGCAGCTTACCCAGATCGAGATAAACGGTTTTGGAAGGTCCGACAACCCTCCAGCGTCTAAAGCAGCTGTAGAGTCTATGCCCACGGTTGAGATCGTCGAGAATCACGTCAGTTCGGAGGCACACTGTGCTGTGTGCAAAGAAGCGTTTGAAGTCGGTTCTGAGGCTCGTGAGATGCCTTGCAAACACATTTACCACTCAGATTGCATTCTTCCATGGCTTTCTCTTCGGAACTCTTGCCCTGTTTGCCGCCAAGAATTGCCTGCAGACGGGGACCGGATTGAGGGCCAGATGCCGGGGCAGTCTCGGGTCGGTGCAGATGAAGAAACCGTGGGGTTAACCATTTGGAGACTACCTGGTGGGGGTTTTGCAGTGGGAAGATTTTCCGGTGGTGTAGGAGTGGGTGAGCGGGAATCGCCACTCGTGTACACGGAAATGGATGGTGGGTTCAATTCCAATGGAGCTCCGAGAAGGGTTTCGTGGGCATCCAGAAGTAACAGAGTAAGAGAAGGTCGTGGAATTGGGAGTCTATTCAGTACTTTCTCCTCATTCATGGGGAGGCTAAGGTCTGGCTCAACTTCATCTTCAAATTCCAGTTCTGAACCCAGGACGACTTACAATTGTTCCAGCTCAGTTTTCAGTAGGTTGAGAAGGAACTCACGGCGGCGCTCTAATACACCGGTCATGGATGATTGA 1137 0.5136 MNPDVPSTLTGSYWCYRCTRILRLWINPDEIACPYCGSGFIEELESGSSAVAQGSPFPAPTSTAMLGDGVRNSYIDGRRQNIRRRRNAVDRSPFNPVIVFRGPSDDVLDGERSNFELYYDDGEGTGLRPLPPSVSEFLMGSGFDRLLEQLTQIEINGFGRSDNPPASKAAVESMPTVEIVENHVSSEAHCAVCKEAFEVGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRQELPADGDRIEGQMPGQSRVGADEETVGLTIWRLPGGGFAVGRFSGGVGVGERESPLVYTEMDGGFNSNGAPRRVSWASRSNRVREGRGIGSLFSTFSSFMGRLRSGSTSSSNSSSEPRTTYNCSSSVFSRLRRNSRRRSNTPVMDD* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00786 378 FunFam E3 ubiquitin-protein ligase RING1-like 152 237 - -
Pte17g00786 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 237 IPR013083 -
Pte17g00786 378 MobiDBLite consensus disorder prediction 334 362 - -
Pte17g00786 378 MobiDBLite consensus disorder prediction 334 378 - -
Pte17g00786 378 Pfam Ring finger domain 189 231 IPR001841 -
Pte17g00786 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 102 235 - -
Pte17g00786 378 Pfam Protein of unknown function (DUF1117) 258 363 IPR010543 -
Pte17g00786 378 SUPERFAMILY RING/U-box 170 236 - -
Pte17g00786 378 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Pte17g00786 378 Pfam zinc-ribbon 12 44 IPR039525 GO:0061630
Pte17g00786 378 CDD RING-H2_RNF126-like 190 231 - -
Pte17g00786 378 SMART ring_2 190 230 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00786 Pte-Chr17 22396433 22398284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00786 123 242 C3H Transcription Factor Family AT5G01980 45.000 4.18e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00786 K11982 - zju:107411035 443.351