Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00742 ATGTCAACCCGACGGTCTCGATCAAGACAATCAAGTGCCTCAAGGAGCATTACCGATGATCAGATCAATGATCTTGTTTCCAAGCTGCAGCAGCTTCTACCGGAGCTTCGAGTTAGGCGTTCTGACAGGGTTTCAGCAGCAACGGTTTTACAGGAGACATGCAACTACATTAGAAGCTTACACAGAGAAGTGGATGACTTAAGTGAACGCCTGACGGAGCTGCTGGCTACAACAGACTCGGCCCAAGCTGCATTAATTAGAAGCTTACTCATGCGATAG 279 0.4803 MSTRRSRSRQSSASRSITDDQINDLVSKLQQLLPELRVRRSDRVSAATVLQETCNYIRSLHREVDDLSERLTELLATTDSAQAALIRSLLMR* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00742 92 Gene3D - 18 88 IPR036638 GO:0046983
Pte17g00742 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Pte17g00742 92 Pfam Helix-loop-helix DNA-binding domain 20 61 IPR011598 GO:0046983
Pte17g00742 92 CDD bHLH_AtPRE_like 17 77 - -
Pte17g00742 92 Coils Coil 57 77 - -
Pte17g00742 92 FunFam Transcription factor ILI6 7 87 - -
Pte17g00742 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Pte17g00742 92 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00742 Pte-Chr17 21349213 21350095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00742 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 71.277 1.42e-37 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte17g00742 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00742 - - qsa:O6P43_022822 142.895