Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00732 ATGGAAGCTCTTAAGCTTTGCTTGCTCTTCTTAAGTGTGTATGCTATTGCCAATTTCCCAACCTTGAGAGCTGGGATAGCTGATTTTGATGAGACTTGGCAGAAGCGCGCTGCCGAGGCCAAAAATGCCTCCATAGAGTCTTATGAACCTGACCCTTTGGATGTCGCCAACCACTTCAATAGCAGAGTGCACGAGTCGACAGAAGATGATGCTCATGAAAATGGTACAAGGAGAGAGTTAGGGCAATCTGATTGCAAAGCAACAAACCCAATTGACCGTTGCTGGAGATGTGACAAGAACTGGGCTAAGAACCGGAAGAGGTTGGCCGATTGTGTCCTTGGTTTCGGCCGAAAAACTACCGGAGGAAAGAAAGGGAAATATTATGTAGTTACGGACGCGTCAGATAGTGATTTAGTAAATCCTAAACCAGGGACTTTGAGACATGCTGTGATTCAAAAAGGACCATTGTGGATCATATTTGCTCGTAGTATGGTTATCCGGCTAACCCAAGAGCTTATGGTAACCAGTGATAAGACAATAGATGGGCGTGGTTTCAATGTACACATTGCCTTTGGGGCACAAATCACATTGCAGTTTGTGAAAAATGTGATAATACACAACCTGCACATTCATGACATAAAGGCAGGATATGGTGGGATAGTTAGAGACTCAGTCGACCACTTCGGAATTCGTACCCAGAGTGATGGTGATGGAATATCTTTGTTTGGAGCCACAAATGTTTGGATTGACCATATCTCAATGACAAATTGCATGGATGGATTGATTGATGCCATCATGCAGACTACAGCTGTCACCATTTCCAATTGCCATTTCACCAAACACAACGAGGCAATGTTGTTTGGAGCAAGTGATGGACACACACAAGATAAATACATGCAAATCACTCTTGCATTCAACCACTTTGGAAAAGGGTTAGTGCAAAGGATGCCACGGTGCAGGTTGGGTTTCTTCCATATTGTGAACAATGACTACACTCACTGGTTAATGTATGCTATTGGTGGTAGCAAAAATCCCACCATCATTAGCCAGGGCAACCGATTTATTGCCCCTCACGACATACACAGCAAGGAGGTGACGAAGAGGGACTACGCACCTAAAAGTGAATGGAAGCATTGGAATTGGAGATCCGAGGGTGACCTACTGATGAATGGAGCCTTCTTCGTACAATCAGGAAGCAAAGTTAATATGCCTAAGCAAAACATCATCAAAGCAAAGCCGGGCTCATTTGTGACGAGACTCGCACGCTATTCAGGCTTCCTCAAGTGTATTCGGGGGAAGCCATGTTAA 1308 0.445 MEALKLCLLFLSVYAIANFPTLRAGIADFDETWQKRAAEAKNASIESYEPDPLDVANHFNSRVHESTEDDAHENGTRRELGQSDCKATNPIDRCWRCDKNWAKNRKRLADCVLGFGRKTTGGKKGKYYVVTDASDSDLVNPKPGTLRHAVIQKGPLWIIFARSMVIRLTQELMVTSDKTIDGRGFNVHIAFGAQITLQFVKNVIIHNLHIHDIKAGYGGIVRDSVDHFGIRTQSDGDGISLFGATNVWIDHISMTNCMDGLIDAIMQTTAVTISNCHFTKHNEAMLFGASDGHTQDKYMQITLAFNHFGKGLVQRMPRCRLGFFHIVNNDYTHWLMYAIGGSKNPTIISQGNRFIAPHDIHSKEVTKRDYAPKSEWKHWNWRSEGDLLMNGAFFVQSGSKVNMPKQNIIKAKPGSFVTRLARYSGFLKCIRGKPC* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00732 435 SUPERFAMILY Pectin lyase-like 70 405 IPR011050 -
Pte17g00732 435 SMART amb_all 163 360 IPR002022 -
Pte17g00732 435 Gene3D - 88 428 IPR012334 -
Pte17g00732 435 MobiDBLite consensus disorder prediction 63 83 - -
Pte17g00732 435 Pfam Pectate lyase 171 354 IPR002022 -
Pte17g00732 435 Pfam Pectate lyase, N terminus 26 80 IPR007524 GO:0030570
Pte17g00732 435 PANTHER PECTATE LYASE 18-RELATED 41 433 IPR045032 GO:0030570
Pte17g00732 435 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Pte17g00732 435 PRINTS Pollen allergen Amb family signature 235 256 IPR018082 -
Pte17g00732 435 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
Pte17g00732 435 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Pte17g00732 435 PRINTS Pollen allergen Amb family signature 379 403 IPR018082 -
Pte17g00732 435 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Pte17g00732 435 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Pte17g00732 435 MobiDBLite consensus disorder prediction 63 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00732 Pte-Chr17 20914095 20915902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00732 8 436 Polysaccharide Lyase AT1G14420 60.268 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00732 K01728 - mof:131145825 632.869