Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00729 ATGCACATGGTGGGGGGGAGCGTCTGTAGCGGTAGTCGTAGTCAAGCTTCCAATTTGAGTCTTTTACTTCACAATCAAACCGTTCTTTCTTCTTCTGATACTGAGCACGTTGATACTCTTTTCCTTTCTGGTCCCTCTTCTTCTTTTATGGGTCCGAGATCCATGATGAGCTTTGAAGATGCTCAAATGAAAAGGGGGTATTGTGAATCATTCTATCGCCCTTTTGACCATGACGACAATCGAGACGACGATTTTGATGAATATTTTCATCAACCTGAAAAAAAGAAGCGTCTTACTTGTGATCAAGTCCTATTTCTCGAGAAAAGCTTCGAGGTGGAGAACAAGCTCGAGCCAGAAAGGAAAATTCAGCTGGCGAAAGACGTCGGTTTGCAGCCCCGACAAGTTGCAATTTGGTTTCAGAACCGCCGTGCACGATGGAAGACGAAGCAGCTGGAGAAAGACTATGAAGTCCTGCACGCTAGATTCGATAGCCTTAAGGCTGACTATGAGAACCTTCTCAAGGAGAAGGATAAGTTAAATGCTGAGGTTCTAGAAATGACAGATAAACTGCTCAAAAGAGAGAAAGAAAGAAAGAATATTCAACTGTTGGATACCGAAGGACCACAAGGACCAGCGCTGAAGGATTTAGTTGATACAGTTTCTGGAGGTGAAGGATCCAAAATATCTTCTAAGGCTTGTAAACAGGAAGATATTAGTTCAGCCAAGAGTGATATATTTGACTCTGACAGTCCTCATTACACGGATGGAGTTCACTCTTCATTGTTAGAGCCTTGTCATTCACCTCATATACTCGAAGCTGATCACTCAGATCTCTCTCAAGATGAGGAGGACAACTTAAGTAAAGATCTATTTCCAATACCAACTTTTGTCTTTCCCAAGTTTGAAGATGCTGATTACTCCAACCCGCCTGAAAATTACTGTAATTTTGGCTTCTCGGTTGAAGAACATGCCTTTTGGTCATGGTCTTTCTGA 993 0.424 MHMVGGSVCSGSRSQASNLSLLLHNQTVLSSSDTEHVDTLFLSGPSSSFMGPRSMMSFEDAQMKRGYCESFYRPFDHDDNRDDDFDEYFHQPEKKKRLTCDQVLFLEKSFEVENKLEPERKIQLAKDVGLQPRQVAIWFQNRRARWKTKQLEKDYEVLHARFDSLKADYENLLKEKDKLNAEVLEMTDKLLKREKERKNIQLLDTEGPQGPALKDLVDTVSGGEGSKISSKACKQEDISSAKSDIFDSDSPHYTDGVHSSLLEPCHSPHILEADHSDLSQDEEDNLSKDLFPIPTFVFPKFEDADYSNPPENYCNFGFSVEEHAFWSWSF* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00729 330 CDD homeodomain 94 150 IPR001356 GO:0003677
Pte17g00729 330 Pfam Homeobox associated leucine zipper 149 190 IPR003106 GO:0006355|GO:0043565
Pte17g00729 330 Coils Coil 155 196 - -
Pte17g00729 330 Pfam Homeodomain 94 147 IPR001356 GO:0003677
Pte17g00729 330 Gene3D - 88 156 - -
Pte17g00729 330 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 69 243 IPR045224 GO:0003700
Pte17g00729 330 PRINTS Lambda-repressor HTH signature 129 145 IPR000047 GO:0003677
Pte17g00729 330 PRINTS Lambda-repressor HTH signature 120 129 IPR000047 GO:0003677
Pte17g00729 330 SUPERFAMILY Homeodomain-like 75 151 IPR009057 -
Pte17g00729 330 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981|GO:0006355
Pte17g00729 330 FunFam homeobox-leucine zipper protein ATHB-6-like 97 143 - -
Pte17g00729 330 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677
Pte17g00729 330 SMART HOX_1 91 153 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00729 Pte-Chr17 20902132 20905137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00729 36 328 Homeobox Transcription Factor Family AT3G01470 37.294 1.26e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte17g00729 Homeodomain 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00729 - - qsa:O6P43_022795 428.328