Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte17g00714 | ATGGCATCATTTGCGGGGACTACCCAAAAGTGCAAGGCATGTGAGAAGACTGTTTATTTGGTGGATCAGCTGACTGCTGATAACAAAATATACCATAAGTCCTGCTTCAGATGTCACCACTGCAAGGGTACCCTTAAGCTCAGCAATTTCTCCTCCTTCGAGGGTGTTCTATACTGTAAGCCTCACTTTGATCAGCTGTTCAAAATGACTGGCAGCTTAGAAAGAAGTTTTGAAGGGAATCGGAAGATAGCGAAAGTTGACAGATCTGTCAATCAGGTTCAAACCAACAGCAAAATTTCAAGCCTGTTTGCTGGAACACAAGACAAGTGTGTCACCTGCAAGAAAACTGTCTACCCAATTGAAAAAGTGGCAGTAGATGGCTCTTCATATCACAAGGCTTGTTTCAGGTGCACACATGGAGGCTGTGTGATTAGCCCATCAAACTACGTCGCTCATGAACAACGCCTCTATTGTAGGCATCACCATACCCAACTCTTCAAAGCGAAGGGAAACTTCAGCCAACTGGACAAACATCAAGAGCAAGTCAAAGTGGTGGTGACTTGA | 564 | 0.445 | MASFAGTTQKCKACEKTVYLVDQLTADNKIYHKSCFRCHHCKGTLKLSNFSSFEGVLYCKPHFDQLFKMTGSLERSFEGNRKIAKVDRSVNQVQTNSKISSLFAGTQDKCVTCKKTVYPIEKVAVDGSSYHKACFRCTHGGCVISPSNYVAHEQRLYCRHHHTQLFKAKGNFSQLDKHQEQVKVVVT* | 188 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte17g00714 | 187 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 136 | 174 | - | - | |
| Pte17g00714 | 187 | Gene3D | Cysteine Rich Protein | 5 | 75 | - | - | |
| Pte17g00714 | 187 | Gene3D | Cysteine Rich Protein | 104 | 174 | - | - | |
| Pte17g00714 | 187 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 102 | 135 | - | - | |
| Pte17g00714 | 187 | PANTHER | OS06G0237300 PROTEIN | 2 | 89 | - | - | |
| Pte17g00714 | 187 | Pfam | LIM domain | 110 | 165 | IPR001781 | - | |
| Pte17g00714 | 187 | Pfam | LIM domain | 11 | 65 | IPR001781 | - | |
| Pte17g00714 | 187 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 36 | - | - | |
| Pte17g00714 | 187 | FunFam | LIM domain and actin-binding 1 | 5 | 75 | - | - | |
| Pte17g00714 | 187 | FunFam | LIM domain and actin-binding 1 | 104 | 174 | - | - | |
| Pte17g00714 | 187 | ProSiteProfiles | LIM domain profile. | 9 | 69 | IPR001781 | - | |
| Pte17g00714 | 187 | CDD | LIM2_SF3 | 110 | 170 | - | - | |
| Pte17g00714 | 187 | CDD | LIM1_SF3 | 7 | 68 | - | - | |
| Pte17g00714 | 187 | SMART | lim_4 | 109 | 161 | IPR001781 | - | |
| Pte17g00714 | 187 | SMART | lim_4 | 10 | 62 | IPR001781 | - | |
| Pte17g00714 | 187 | ProSiteProfiles | LIM domain profile. | 108 | 168 | IPR001781 | - | |
| Pte17g00714 | 187 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 37 | 77 | - | - | |
| Pte17g00714 | 187 | ProSitePatterns | LIM zinc-binding domain signature. | 11 | 45 | IPR001781 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte17g00714 | Pte-Chr17 | 20271773 | 20273474 | Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Pte17g00714 | LIM | 2.1e-10 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte17g00714 | K09377 | - | rcu:8258110 | 346.665 |