Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00707 ATGTTGGATTATGGCACATTGCCAATTATGGAAAAAGTTATCCACTCTCCTCAGTCATCTCTCTCCACAATCCAAGCTCCATATTACGGCATTATCCATGAAAATGAAGCAGCATCAACCACGTCCCTCAGCAGAATAAGTCCTTATATTCTCTTATTTATAGTAATTCTAGCTGTCATATTCTTCGTTTCTGGTCTTGTTCATCTCCTCCTCAGATTTCTGAAAAAAGGTCCTTCCTCTTCATTTGTCTTCCATTCCAATAGATACCCTGATCAATCGAGTGGCCCACCTACTTTTCAGCGACAGCTTCAACAGCTCTTCCGCTTACATGATTCAGGTCTGGACCAAGCTTTCATAGACGCTCTACCTGTCTTCTGCTACAAAGATGTGAGCGGTTTGAAGGAACAGTTTGATTGTGCAGTTTGTCTCTGTGAGTTTACCGAGGAAGACAAACTGAGGTTGCTTCCAATATGCAGTCATGCTTTTCACATCGACTGCATTGATACGTGGCTCCTCTCAAATTCCACATGTCCCCTTTGTAGACGGACTCTTTCAAGCTCTAACTTTGAAAACCAAATATACAATCTCGGCAACAGTTCTCAGCCGCTGTCAACCAGATTTCAAGATGAAGGAGGCAATGGCTGTCCCGATAATCAGAAACCAGAAGGCAGTACCGGAGAATTGGTCTTGTCTGTGAGACTTGGGAAGTTCAGAAATAGCGATTTGCAGAATAATATAGAGATAAGGTTAGGAAAAGGAGAGAGCAGCAGCAGCCATTTGGACGGTAGGAGATGCTTCTCCATGGGTGCATATCAATATGTAGTTAGTGACTCAAGTCTGCATGTTGTGTTAGGCCGAGATGGCTGTGTTGGAGGCAGAAGTTTGAGGAGGGTTGAACTTGCTGACATTCCACTTCCAGAAGATGAGACTACGTTTGGCAAAAGAGTAGGTGCCAGGACAAGAGGTGATAGCTTCTCTCTGTCCAAGGTTTGGCTTTGGGCAAATAGGAGCAAATTCCACAGTTCTTCAAGTACTCTTATGTGCATTCCATCTTCTGTTGATTACTCTAAGTGA 1074 0.4358 MLDYGTLPIMEKVIHSPQSSLSTIQAPYYGIIHENEAASTTSLSRISPYILLFIVILAVIFFVSGLVHLLLRFLKKGPSSSFVFHSNRYPDQSSGPPTFQRQLQQLFRLHDSGLDQAFIDALPVFCYKDVSGLKEQFDCAVCLCEFTEEDKLRLLPICSHAFHIDCIDTWLLSNSTCPLCRRTLSSSNFENQIYNLGNSSQPLSTRFQDEGGNGCPDNQKPEGSTGELVLSVRLGKFRNSDLQNNIEIRLGKGESSSSHLDGRRCFSMGAYQYVVSDSSLHVVLGRDGCVGGRSLRRVELADIPLPEDETTFGKRVGARTRGDSFSLSKVWLWANRSKFHSSSSTLMCIPSSVDYSK* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00707 357 CDD RING-H2_EL5-like 138 181 - -
Pte17g00707 357 SMART ring_2 139 180 IPR001841 -
Pte17g00707 357 SUPERFAMILY RING/U-box 118 186 - -
Pte17g00707 357 Pfam Ring finger domain 138 181 IPR001841 -
Pte17g00707 357 FunFam RING-H2 finger protein ATL46 101 186 - -
Pte17g00707 357 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Pte17g00707 357 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 42 331 - -
Pte17g00707 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 190 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00707 Pte-Chr17 20092246 20093945 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00707 39 344 C3H Transcription Factor Family AT2G18650 41.159 3.00e-53 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00707 - - qsa:O6P43_022735 349.362