Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00682 ATGGATCCTCAACAAAATCCCCCTGGCAACTTTGGCTACAGGCCAATGCAATTGACAGATAGTTACTCGAACCCCAACTTGAAAGATGAGCTCCACTATAGAGTTCCTTCATCCAAGAGAACTTACTTGCAGGATTTCATCCACCTTGAACAGTTTCATGCCAATGGATCATCATCAAATTCAGTTTTTGGGGTGCAGGCTCTAAATTTTGATCCTTTTGAAAATTTCAAATTCGGTTGTACGTCCACTGAATTTGATATATATGAGTGCAAACCCTTTGCTGAAAACAATGGTGGACAAGCTCATGTCATGGACAATTTCCAGTGTGCAGGAGGGTATGGCTTGAATCTTCATCAGGAGCCTCACATGGATATGATGGGACTCAATCATGGTTATGTGATACCGTTTGACTGTCAAGAAATCGATTCTGTAAATTTTGTGGTGCCTGATGAGGTCTCATGCATATCCCAGGGAAAAGGATATTACAAAAAAGCAGTCTTGGACAAGAATAGGGCATCTCCTATCAACAGAAGAAGCTACAAAGATCGGAAGAAGCCTAATATTGTTAAGGGGCAGTGGACTATCGAAGAAGACAGGGTGTTGATTCAACTGGTCGAGCAGTATGGAATAAGAAAGTGGTCTCACATTGCTCAGATGTTGCCTGGTCGAATAGGCAAGCAATGCAGGGAGAGATGGCATAACCATCTAAGGCCAGACATTAAGAAGGATGCATGGAGTGAAGATGAGGATAAGATATTGATTCAAGGTCATTCAGAGATAGGAAATAAATGGGCTGAGATTGCGAAAAGATTACCAGGTAGAACTGAAAACTCAATTAAGAACCACTGGAATGCCACAAAAAGAAGGCAATATTCTAAAAGGAAATGCAGGTCTAAGCACCCCAAAGGCTCTCTTCTACAAGAATATATTAAAAGTTTGAACCTTGATGCTAACCTATCAAATTACAAAAGGAGAAAGTCTTCATCGTCCGCAATGAACGAAGAGGAAACTCAAACTCTGAATGAAAATCAGTTTTGTCCCGGTGATGTTTTGGTTCCTAGCTATGAATTCAATGGAGTTCAAGATTTCTGTTTCGACGAGAATATGTTTCAAGAGGCTTGCAGTATTGATACTCTTCTTCATGATATGCCATGTGCACCGGTTATGGATGACAATGATGGTGAAGGAAATATGAGCTATAATAATGGCACTGCAATTGATGTAGACGCACCAGATGGTAATGATGACTATGATAGTAGCAACAACGAAATTTTTGAGAGAATGATAACACCAAAGGAGATATCGGTTCTGGGTTAA 1317 0.4039 MDPQQNPPGNFGYRPMQLTDSYSNPNLKDELHYRVPSSKRTYLQDFIHLEQFHANGSSSNSVFGVQALNFDPFENFKFGCTSTEFDIYECKPFAENNGGQAHVMDNFQCAGGYGLNLHQEPHMDMMGLNHGYVIPFDCQEIDSVNFVVPDEVSCISQGKGYYKKAVLDKNRASPINRRSYKDRKKPNIVKGQWTIEEDRVLIQLVEQYGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDAWSEDEDKILIQGHSEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKHPKGSLLQEYIKSLNLDANLSNYKRRKSSSSAMNEEETQTLNENQFCPGDVLVPSYEFNGVQDFCFDENMFQEACSIDTLLHDMPCAPVMDDNDGEGNMSYNNGTAIDVDAPDGNDDYDSSNNEIFERMITPKEISVLG* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00682 438 SMART sant 241 289 IPR001005 -
Pte17g00682 438 SMART sant 189 238 IPR001005 -
Pte17g00682 438 ProSiteProfiles Myb-like domain profile. 237 287 IPR001005 -
Pte17g00682 438 FunFam Transcription factor MYB119 243 307 - -
Pte17g00682 438 ProSiteProfiles Myb-like domain profile. 185 236 IPR001005 -
Pte17g00682 438 PANTHER MYB PROTEIN-RELATED 169 327 - -
Pte17g00682 438 Gene3D - 189 241 - -
Pte17g00682 438 Pfam Myb-like DNA-binding domain 193 250 - -
Pte17g00682 438 SUPERFAMILY Homeodomain-like 187 283 IPR009057 -
Pte17g00682 438 FunFam Transcriptional activator Myb isoform A 189 242 - -
Pte17g00682 438 CDD SANT 244 287 IPR001005 -
Pte17g00682 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 240 IPR017930 -
Pte17g00682 438 Gene3D - 243 309 - -
Pte17g00682 438 CDD SANT 193 236 IPR001005 -
Pte17g00682 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 241 291 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00682 Pte-Chr17 18142680 18144184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00682 68 384 MYB Transcription Factor Family AT4G18770 49.128 6.91e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte17g00682 Myb_DNA-bind_6 4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00682 K09422 - qsa:O6P43_022705 494.967