Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00672 ATGGCCTCATCTAGTTCATACAATTCTCCTTGCGCTGCCTGCAAATTTCTACGGAGAAAATGCATGCCAGGCTGTATCTTTGCACCTTACTTTCCCCCTGAAGAACCACAAAAATTTGCCAACGTACACAAGATATTTGGTGCCAGCAATGTCACTAAGCTTCTGAACGAGCTTCTCCCACATCAGAGGGAGGATGCAGTCAATTCACTTGCATATGAAGCGGAAGCCCGAGTCAGAGACCCAGTTTATGGTTGCGTAGGTGCCATCTCTTACCTCCAGAGACAGGTCCAAAGGCTACAGAAAGAGCTGGATGCTGCTAATGCTGATCTGATCCGTTTTGCTTGCAGTGACATACAACCTCCTGCTGCCTTACCTACACCACACGGATTGCACACATTTCCACCAATGGATCCACGGCCAAGGGCGGCCGATTTCAGTGGAAGGATCAGTAATGAAGGATTCCTAGGTGGGTACTATAATTATAGACAACAACCACCTTCTACTACTGGCCTTGTACCTTATCCGCTTCCTTGGACGGACTCTTCTTCTGGTGATATTAACGGAGGAGGAGGTCATATGTGA 582 0.4777 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVQRLQKELDAANADLIRFACSDIQPPAALPTPHGLHTFPPMDPRPRAADFSGRISNEGFLGGYYNYRQQPPSTTGLVPYPLPWTDSSSGDINGGGGHM* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00672 193 Coils Coil 89 109 - -
Pte17g00672 193 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Pte17g00672 193 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 123 - -
Pte17g00672 193 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00672 Pte-Chr17 16419863 16421995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00672 2 189 AS2 family AT5G63090 62.755 1.63e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte17g00672 LOB 1.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00672 - - tcc:18604002 280.796