Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00671 ATGATTGGAGGGCATGCAGAGACTGGGTCACCGATCGTGGTAAACCCAATCTTCAATTTTTCTCTCAACATTTTGGGAAATCTAGAGTGCAGGACAGAGAATAATAGAAATGATCACAGATTGGGTGATTTAACATTTGACATAAAGGTTGCAGAGTGTGGTACTAGAGAATTTACGGATCAGAAGAGGGTGGAGATGACAGTTTCAGAATTTGTTGACAAGTGGATCCAGGAATCTGTGGAGAACTATGCTAATACTGATGGAGCTGTAAAATGTGATAATCAGTCCGTATTATATCTAAAGGACTGGCATTTTATGAAGGAGTATCCAGAATATAAAGCCTATACAACACCACTTTTCTTCTGCGATGATTGGCTCAATTCATATCTTGACAAATACCCCATGCATACGCATTCTGATGCATACCAAGAATGTAATGATATTATTTGTTCTGATTACCGCTTTGTTTACATGGGAGCAAAAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGATCATATAGTTGGTCTGCAAATGTTTGTGGAAAGAAAAGATGGCTTTTTCTATCTCCTTCACAGTGTCATCTTGTATTTGACAGATACATGAAATGCAGTGTATACAATATCTTTGACAATGTTTCTGAGAATGAATTTCCTGGGTTTAAGGAGGCACTCTGGTTAGAATGTATCCAAGAAGAAAACGAGATCATATTTGTTCCTAGTGGCTGGTATCATCAAGTTCATAATCTGGAGGATACAATCTCGATAAACCACAACTGGTTCAATGCCTATAACCTCTCTTGGGTGTGGAATTTACTTGCAAAGGAGTATAAGGAGGCAAAAGAGTATATTGAAGACATTAAGGATATCTGTGATAATTTTGAAGAACTCTGCCAGCGGAATCTTGCTGCAAATGCAGGTACTGGTCACGACTCATCAAAATACTGCTACATGCTGTTGGGCGTAATGTCACACAAATTTGTTTCAATTGTTCGTTATTGA 1005 0.3831 MIGGHAETGSPIVVNPIFNFSLNILGNLECRTENNRNDHRLGDLTFDIKVAECGTREFTDQKRVEMTVSEFVDKWIQESVENYANTDGAVKCDNQSVLYLKDWHFMKEYPEYKAYTTPLFFCDDWLNSYLDKYPMHTHSDAYQECNDIICSDYRFVYMGAKGSWTPLHADVFRSYSWSANVCGKKRWLFLSPSQCHLVFDRYMKCSVYNIFDNVSENEFPGFKEALWLECIQEENEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLAKEYKEAKEYIEDIKDICDNFEELCQRNLAANAGTGHDSSKYCYMLLGVMSHKFVSIVRY* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00671 334 ProSiteProfiles JmjC domain profile. 106 278 IPR003347 -
Pte17g00671 334 SMART cupin_9 98 278 IPR003347 -
Pte17g00671 334 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 47 308 - -
Pte17g00671 334 Gene3D Cupin 22 263 - -
Pte17g00671 334 Pfam Cupin-like domain 40 261 IPR041667 -
Pte17g00671 334 SUPERFAMILY Clavaminate synthase-like 47 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00671 Pte-Chr17 16267744 16271086 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00671 94 278 Glycosyltransferase AT1G78280 27.461 1.01e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pte17g00671 Cupin_8 1.2e-17 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00671 - - jre:109003857 437.958