Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00667 ATGAATCCATACGATAGAAGATTCACTGATGCAACTTCATATCGCGAACGTCGAAGCGATTTTCTGCGCCCACCGACTAGGATAGGTGGGCCCCTTGCATACGGTCGCGGTGGGCCTGTTCAATACGCTGGTGTTTCCTCGGTTGCTTATAGTGCGGGTAGAGGAGGAGCTGGCGCTACGGGTGAATCGGCAGCCCCTGCGCCAATGTTTGATGCATACCCGCCATTTGTGGCTCCTGCGGGAAATTTTGACATGGGTCGTGATGGTGGCAGGAATGAAAGGGGGTTTAGTGGTAAGGTAGCCAATGGTCACTTTTGCGGAGGTAGAAGGAGTGACATGGGTAGAGGCGGACGAGACCGTGATATACTGGGCTACGGCCGAGGTGGGCGAGGAGTTGGTGGGAAATATGAAGGCAGGAGTCGCGGAGGAAGCGTTGGCAATGGGCATGGTGGTGGGAGAGGCAGCAGACAGGGTGGATCATCGAGAGGGGACTTGGACAGCATTGCTCTTCCGAGGCAGGATTTTGGGAATTTGGTACCATTTGAGAAGAACTTTTATGTCGAGAGCCCCATGGTACAGGCAATGTCTGAGCAAGAAGTTATGCTATATCGAGCAAGGAGGGAGATAACAGTACTAGGCCATGACATTCCAAAACCAATAAGAATGTTTCGTGAAGCAAATTTCCCAGATTACTGCCTTGATGTTATAGCGGAATCGGGTTTTGTCGAGCCTACACCAATTCAGGGTCAGGGATGGCCAATGGCTCTAAAAGGTAGAGATTTGATTGGCATCGCTGAAACTGGTTCTGGTAAAACATTAGCATATCTGCTTCCAGCTTTAGTACATGTCAGTGCCCAACCTAGATTGGCACGTGGTGAAGGCCCAATTGTGTTAATCTTAGCACCTACCAGAGAATTAGCTGTTCAGATTCAACAAGAAGCAGTAAAATTTGGTTCAAGAGCCAATGTTAGAAGTACTTGTATCTATGGAGGGGCACCAAAGGGACCTCAAATTGGTGATCTTAAAAGAGGTGTTGAGATTGTAATTGCTACACCTGGTCGGTTGATTGATATGTTAGAAGCACTGCACACAAACTTGCGAAGAGTAACTTACCTTGTATTGGATGAAGCTGATCGAATGTTAGACATGGGGTTTGAACCTCAGATAAGGAAAATTGTAGCTCAGATCAGACCAGATAGGCAGACTCTATATTGGAGTGCAACATGGCCTAGGGAGGTTGAGACTTTGGCAAGTCAGTTCTTATGTAACCCGTGCAAGGTGGTTATTGGTTCCCCAGAATTGAAAGCTAATCAATGTATAAATCAAATTGTTGAGGTTGTTACAGATATGGAGAAGTATAATAGACTAATCAGACTGCTAAAAGAAGTCATGGGTGGAAGCCGAATTCTGATATTTATGGAGACCAAAAAGGGTTGTGACCAAGTCACCAGACAGTTGAGATTAGATGGTTGGCCAGCTCTATCCATTCATGGTGACAAAAACCAGGCTGAAAGGGACTGGGTTCTTGCTGAGTTTAAAAGTGGCAGAATTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGACGTGAAGGACATTAAATGTGTTATCAATTATGATTTCCCTTCAAGCCTTGAGGATTATGTGCATAGAATTGGAAGGACAGGTCGTGCAGGAGCCAGAGGAACTGCATATACCTTCTTCACGCAGGCAAATGTCAAGTTCGCTAGAGAGCTGATCAAGATACTACAAGATGCCGGAAAGTTTGTGAGTCCTGCATTGTCTGCCATGGCTCGCTCAGCTGGTTCTTCTGCTTCAGGATCTGGTGGACGCTTCCGCTCTAGAGGACGTGGAGGCTATGGAAATAGATCACTGATTTCTGGATCTAATACCATTCCTTTGGGCGGCACCAGACCGCTGTAG 1929 0.4697 MNPYDRRFTDATSYRERRSDFLRPPTRIGGPLAYGRGGPVQYAGVSSVAYSAGRGGAGATGESAAPAPMFDAYPPFVAPAGNFDMGRDGGRNERGFSGKVANGHFCGGRRSDMGRGGRDRDILGYGRGGRGVGGKYEGRSRGGSVGNGHGGGRGSRQGGSSRGDLDSIALPRQDFGNLVPFEKNFYVESPMVQAMSEQEVMLYRARREITVLGHDIPKPIRMFREANFPDYCLDVIAESGFVEPTPIQGQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLARGEGPIVLILAPTRELAVQIQQEAVKFGSRANVRSTCIYGGAPKGPQIGDLKRGVEIVIATPGRLIDMLEALHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWPREVETLASQFLCNPCKVVIGSPELKANQCINQIVEVVTDMEKYNRLIRLLKEVMGGSRILIFMETKKGCDQVTRQLRLDGWPALSIHGDKNQAERDWVLAEFKSGRIPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGARGTAYTFFTQANVKFARELIKILQDAGKFVSPALSAMARSAGSSASGSGGRFRSRGRGGYGNRSLISGSNTIPLGGTRPL* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00667 642 FunFam ATP-dependent RNA helicase RhlB 431 604 - -
Pte17g00667 642 Gene3D - 432 603 IPR027417 -
Pte17g00667 642 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 200 600 - -
Pte17g00667 642 SMART ultradead3 240 443 IPR014001 -
Pte17g00667 642 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 373 381 IPR000629 -
Pte17g00667 642 MobiDBLite consensus disorder prediction 625 642 - -
Pte17g00667 642 Gene3D - 194 431 IPR027417 -
Pte17g00667 642 Pfam DEAD/DEAH box helicase 245 416 IPR011545 GO:0003676|GO:0005524
Pte17g00667 642 MobiDBLite consensus disorder prediction 111 167 - -
Pte17g00667 642 MobiDBLite consensus disorder prediction 602 642 - -
Pte17g00667 642 FunFam probable ATP-dependent RNA helicase DDX17 183 430 - -
Pte17g00667 642 SMART helicmild6 480 561 IPR001650 -
Pte17g00667 642 Pfam Helicase conserved C-terminal domain 451 561 IPR001650 -
Pte17g00667 642 MobiDBLite consensus disorder prediction 111 125 - -
Pte17g00667 642 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 221 249 IPR014014 GO:0003724
Pte17g00667 642 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 252 427 IPR014001 -
Pte17g00667 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 294 580 IPR027417 -
Pte17g00667 642 CDD SF2_C_DEAD 440 570 - -
Pte17g00667 642 CDD DEADc_DDX5_DDX17 233 428 - -
Pte17g00667 642 MobiDBLite consensus disorder prediction 1 23 - -
Pte17g00667 642 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 455 600 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00667 Pte-Chr17 15609470 15619742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00667 218 599 Eukaryotic Initiation Factors Gene Family AT3G19760 34.817 2.83e-68 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00667 K12823 - qsu:112035669 867.84