Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00650 ATGGGTACTGTGTTTCCCGAAAATGGGGGCTACGTATACGTTGTTTGGGTTGCATCTGCATTGGGTTCTTATTGGGGTTTTCAGCAAGGTTGGATGAAATGGCTTAGTGGGGTAATTGATAACACCTTATACCCGGTTATGTTTCTCGATTACCTCCAGTCAGGAATCCCTGCTTTCGAGGATGGTGTTTTCTCGATATTCCCCTTTGTGGTAATGGGAGTTGTGTCAATCTCCAAGTTGGAGCCTTTGAGATGTATTGGGGCAGTTCCACTCGATCGCGAGCTTTGGAGGGATGAGTATTTTTCCAATATTGCCAAATTCATTGGAGGTGCTTGGTTAAGCCGGTGGATCCAATCAGCTTTGTGTCTGTCAAAAGCAGACACACCGTGCACTAAGAATCTTCATCAAAAAAAGAAAAATGTTCATGAAGAAACGGGTCAGCCCGTTTTCGATTTCCCGAACCTCAAATCTCTCGGCAGTTTTGATCCTTCCAAATTTCCAATCAAGGCCAATTATACCATGGAACCGAAAGTTAGCGTTTCGGTTGCCTATTTGCTTCTTCTGATCTCCGTTCTTGGTGGCGAAAGAACAATCCAAGTCTCCCTTGCTAGCCAGGACCATGAAGAATCTGCTGGTGTTGGAAGATTGTTTGAGCAAGAGCAAGCTCGTGAAGTACACTGTTCTAGAGAGAGAAGCAGGGCAGCCTGGAATGTTATCCAGGAGTATTTGATGCCGTTTGTGGAACGAGAAAACTATCAGCTCTCACGTGAATGTAGACTTCATGCTGACAATGATATTTTCAGAGATCAGGAAGAGCACAAGGTTCAAATTGATATGCGTGAGTGGCGCTGTGGATACTGTAAGAAAAGCTTCCGTGCTGAAAAATATCTTGATCAACATTTTGATAACAGGCACAACAATATTTTGAATTTAAGTCATGGTAAGTGCTTGGCTGATTTGTGTGGTGCATTGCACTGTGATGCTATGATGAAAACCAAATCTTCTAAGATCAAGTGTAATCCTGCAGCTGCTGCAAGAAATCGCCACATATGTGAGAGTCTGGCAGATAGTTGTTTTCCTGTAAATAAAGGTCCCTCAGCTAGCCGTCTTCACGAATTATTTTTGCATCAATTCTGTGAGGCACACACCTGCTCTGCAAAACAGAAACCTTTCTCCAGGGGAGGCAGGAAGCAAAAAGGCTTCTTCTATCTGGCTGCTGGATTACTGACCATGATACTACTTCCAATATTCTATCTCTTTGTTTATTTGATCCAAAGAGATACAAGGGAAAGAAGTCAGCAGCTCAGACGCATATCAAGAGTAGGAAGGAAGTCAAAACCGTCGTAG 1347 0.4343 MGTVFPENGGYVYVVWVASALGSYWGFQQGWMKWLSGVIDNTLYPVMFLDYLQSGIPAFEDGVFSIFPFVVMGVVSISKLEPLRCIGAVPLDRELWRDEYFSNIAKFIGGAWLSRWIQSALCLSKADTPCTKNLHQKKKNVHEETGQPVFDFPNLKSLGSFDPSKFPIKANYTMEPKVSVSVAYLLLLISVLGGERTIQVSLASQDHEESAGVGRLFEQEQAREVHCSRERSRAAWNVIQEYLMPFVERENYQLSRECRLHADNDIFRDQEEHKVQIDMREWRCGYCKKSFRAEKYLDQHFDNRHNNILNLSHGKCLADLCGALHCDAMMKTKSSKIKCNPAAAARNRHICESLADSCFPVNKGPSASRLHELFLHQFCEAHTCSAKQKPFSRGGRKQKGFFYLAAGLLTMILLPIFYLFVYLIQRDTRERSQQLRRISRVGRKSKPS* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00650 448 ProSitePatterns Zinc finger C2H2 type domain signature. 284 305 IPR013087 -
Pte17g00650 448 ProSiteProfiles Zinc finger C2H2 type domain profile. 282 307 IPR013087 -
Pte17g00650 448 PANTHER ZINC FINGER PROTEIN-RELATED 179 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00650 Pte-Chr17 13566029 13579109 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00650 200 449 C2H2 Transcription Factor Family AT5G63280 60.800 1.91e-107 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte17g00650 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00650 - - qsa:O6P43_022597 407.142