Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00649 ATGGCCCCCAGTTTTGATTCATTGAGAGTTGAGTGTTACAATCAAAATGATGATCACAATGAATCAATTGGCATTGATCTTCATCTTTCAGCTGCTGCTCGCTACCCCCATCGGTTTACTCCAATGGCGGAAAGCAAAGCTTCAAGCTTCATCTTCCCCTACGCCAATGAAACCAGGGACTGCAAGAGGTTAAAGAGAAACAACATAACTGTCCCTGACTCGCTTAGACATAGCGGCATGAATCTTTATACAGGTGGAGGAAGCAATTTGTCTCACAGTGCCTGCAACGGCAGTATTAGCCGCAGTGACAGCTTAGGCAATGTTAATACTTTGCCAAAGCTTCATTTCAGAGATCACATCAAGATTTACACTCAAAGATACCTAGCAGCTGAAGCTGTTGATGAAGCGACGGCGGCTATGGCTAATTCCGAGGAAGGTGGCGGTGAAAAAGATGGATGTGCTGATGGAATGAAGCTTGTGCAACTTCTGATTGCTTGTGCTGAAGCTGTGGCTTGCCGTGACAAGAGTCACGCGTCCGTTTTGCTTTCTGACCTGCGAGCTAATGCTTTGGTGTTCGGTTCTTCCTTCCAGCGTGTTGCTTCTTGCTTTGTCCAAGGCCTAGCTGACAGGCTCGCAATGATTCAACCGCTTGGAGCAGTGGGAATCGTTTCACCAGTAATGAACATCATGGACAATGCATCAGAAAAGATGGAGGAGGCTTTACGCCTGGTCTACGAAATTTGCCCGTACATCAAGTTTGGTCACTTTGTGGCAAATTCAACAATATTGGAAGCCTTTGAGGGTGAGAGTTTTGTCCATGTGGTTGATCTGGGGATGACCCTTGGTTTATCACATGGTTATCAATGGCGAGGACTGATCCAGAGCCTTGCAAATCGCTCTGGTAAACCTCCTCGCCGTCTTAGAATAACTGGTGTTGGTCTCTGTGTTGAGAGATTGGATGCCATTGGGGATGAGCTTAGAGCTTATGCAAAACAATTCGGAATAAACTTGGAGTTCTCGGTCGTGCAAAGAAGTTTGGATACCCTGACGCGCGAAGACATAAAAGTCGAAGAGGGAGAAGCTCTAGTAGTAAACAGCTTATTTCAGCTGCACTGCGTGGTCAAAGAAAGTCGTGGAGCATTGAACTCAGTCCTGCAGATGATTCATGGACTCTCGCCAAAGCTGTTAGTTTTGGTTGAGCAGGACTCAAGCCACAATGGACCTTTCTTTCTTGGAAGGTTCATGGAAGCACTGCACTATTACTCTGCAATTTTTGACTCCCTGGATGCTATGTTGCCCAAGTATGACACAAGGCGTGCCAAGATGGAACAGTTTTACTTTGCCGAGGAGATAAAGAACATAGTGAGCTGTGAGGGGCCAGCAAGGGTGGAGAGGCACGAGAGGGTGGACCAGTGGAGGAGGAGGATGAGCAGGGCTAGGTTTCAGGCTGCACCAATCAAGATGATGGCTCAGGCCAAACAATGGCTCAGCAAGAATAAGATTTCTGATGGCTATACCATTGTGGAAGAGAAGGGATGCTTGGTGCTAGGCTGGAAGTCAAGGCCAATTGTTGCAGCTTCTTGCTGGAAATACTAG 1596 0.4712 MAPSFDSLRVECYNQNDDHNESIGIDLHLSAAARYPHRFTPMAESKASSFIFPYANETRDCKRLKRNNITVPDSLRHSGMNLYTGGGSNLSHSACNGSISRSDSLGNVNTLPKLHFRDHIKIYTQRYLAAEAVDEATAAMANSEEGGGEKDGCADGMKLVQLLIACAEAVACRDKSHASVLLSDLRANALVFGSSFQRVASCFVQGLADRLAMIQPLGAVGIVSPVMNIMDNASEKMEEALRLVYEICPYIKFGHFVANSTILEAFEGESFVHVVDLGMTLGLSHGYQWRGLIQSLANRSGKPPRRLRITGVGLCVERLDAIGDELRAYAKQFGINLEFSVVQRSLDTLTREDIKVEEGEALVVNSLFQLHCVVKESRGALNSVLQMIHGLSPKLLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRARFQAAPIKMMAQAKQWLSKNKISDGYTIVEEKGCLVLGWKSRPIVAASCWKY* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00649 531 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 128 525 IPR005202 -
Pte17g00649 531 ProSiteProfiles GRAS family profile. 150 530 IPR005202 -
Pte17g00649 531 Pfam GRAS domain family 159 530 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00649 Pte-Chr17 13560470 13562158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00649 151 530 GRAS Transcription Factor Family AT1G66350 38.182 4.36e-80 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pte17g00649 GRAS 2.3e-115 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00649 - - pop:7454530 758.444