Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00635 ATGGAATTCTCTGAATCCGAATCAGTTTCAGTTCCTATTACTTGCAAAGACTCTGAATTAGGGTTTAAGTCTGCTATTTCTTCGCCTGCTATTATACCCTTCAGCAATCCTGATCAATCGTCAGATCTCGATCATGTAGCTGATAAATACGATTCACTTCCGAACGATCTCCAGAATAAGTTACAATTGAAAGAAAATGGTGTTGAACAGCAGAAAGAAGGGGGAGGAGAGGTTGGAAATGACCTCCAAGTTTCAAACTTTAATGGTGGTTTTGGAGAAGAAGCTCAGGAGGAGGTGGAAGGAGGAGTAAATTATGGAGGAGATGATAGTGGTTGGGGCGAAAATGTGTACGAGGATAGTGGCTGGACTGAAGATGTGGGTTGGAATGATAATGAGAGGAGGGTTGACGAGGATAGTGTTATTGTTGGTGAGGATGTGGACAACAAGTACGACATATATAACAGTGGTGGTTTGTATCAGTACCCAGTAAGGCCAGAAGCTGAAGATTGCGCTTTTTATATGAAAACTGGGACTTGTAAATTTGGATCTAATTGCAAGTTTAATCACCCTCTTAGAAGGAAAAACCAGGTCTATAAGGGGAAGGTGAGGGGAAATGGAGAATTAACAGAAAGATCCAGCCAAACAGAGTGCAAGTATCACCAAAGCTCAGGAGGGTGTAAGTTTGGAGATGCGTGTAGATATAATCACACAGGAATGAGAAGTTCCCCTGCTCCTGCTCTAGAGCATAATTTTCTGGGATTGCCTATCCGGCTGGGAGAGAAAGAGTGCCCATATTACATGCGCAACGGTTCCTGCAAGTATGGGGCAAGCTGTAAGTTTAATCATCCTGATCCTACAGCTGTTGGTGGAGGTGACTCTCCTGCATTTAGTAATGGCGGATGTCTTCCTCTGCATGGCTTAACTCAAGCCTCTATTGCAACGTGGTCTACTCCGGTCACATTAACCGAGACCCCACCTTTTGTTCCAGTGGTGCCTTTACCAAACCAAGGAGTTTCTCCTGGAAGTCCAGAATGGAATGGGTATCAGCAACATGTGTATGTACCTCAAAGGAATAGGGGTCCACTTGCTCCCTGCGTCATGAATAGCCCAACGATTGAAACCAATGCTTATGGACATCTGCCGCAGCAAATGCAAGTTGAGGAATTTCCAGAGCGGCCTGGTGAACCAGATTGCAGTTACTTCTTGAAAACTGGAAGTTGCAAGTTCAAATCTTATTGTAAATTTCACCATCCCAAGAATCGAGTTGCTAGAACACCACCATGCACCTTGAATGACAAGGGTTTACCTTTGAGGCCGGACCAGAATGTCTGCACACATTACAGTCGCTATGGGATATGCAAATTTGGGCCAGCTTGTAAATTTGATCATCCTATGCACTCACCTTCACCAATGTCGGGGCTTGATCAGCACTCTTCCTACGCCAACTCCACTACCTCAAAAGGGCCTGGAATCACCAGAACGGGAAGCGGAAATGCTACCCTTGTTCAGCAAGCTGTGTAA 1521 0.449 MEFSESESVSVPITCKDSELGFKSAISSPAIIPFSNPDQSSDLDHVADKYDSLPNDLQNKLQLKENGVEQQKEGGGEVGNDLQVSNFNGGFGEEAQEEVEGGVNYGGDDSGWGENVYEDSGWTEDVGWNDNERRVDEDSVIVGEDVDNKYDIYNSGGLYQYPVRPEAEDCAFYMKTGTCKFGSNCKFNHPLRRKNQVYKGKVRGNGELTERSSQTECKYHQSSGGCKFGDACRYNHTGMRSSPAPALEHNFLGLPIRLGEKECPYYMRNGSCKYGASCKFNHPDPTAVGGGDSPAFSNGGCLPLHGLTQASIATWSTPVTLTETPPFVPVVPLPNQGVSPGSPEWNGYQQHVYVPQRNRGPLAPCVMNSPTIETNAYGHLPQQMQVEEFPERPGEPDCSYFLKTGSCKFKSYCKFHHPKNRVARTPPCTLNDKGLPLRPDQNVCTHYSRYGICKFGPACKFDHPMHSPSPMSGLDQHSSYANSTTSKGPGITRTGSGNATLVQQAV* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00635 506 ProSiteProfiles Zinc finger C3H1-type profile. 211 239 IPR000571 GO:0046872
Pte17g00635 506 SUPERFAMILY CCCH zinc finger 258 284 IPR036855 GO:0046872
Pte17g00635 506 MobiDBLite consensus disorder prediction 29 52 - -
Pte17g00635 506 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 441 465 IPR000571 GO:0046872
Pte17g00635 506 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 168 190 IPR000571 GO:0046872
Pte17g00635 506 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 215 236 IPR000571 GO:0046872
Pte17g00635 506 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 394 419 IPR000571 GO:0046872
Pte17g00635 506 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 283 IPR000571 GO:0046872
Pte17g00635 506 PANTHER PROTEIN PHOSPHATASE RELATED 153 477 - -
Pte17g00635 506 SUPERFAMILY CCCH zinc finger 163 193 IPR036855 GO:0046872
Pte17g00635 506 SUPERFAMILY CCCH zinc finger 436 464 IPR036855 GO:0046872
Pte17g00635 506 ProSiteProfiles Zinc finger C3H1-type profile. 257 285 IPR000571 GO:0046872
Pte17g00635 506 Gene3D - 129 199 - -
Pte17g00635 506 MobiDBLite consensus disorder prediction 471 506 - -
Pte17g00635 506 SUPERFAMILY CCCH zinc finger 397 421 IPR036855 GO:0046872
Pte17g00635 506 ProSiteProfiles Zinc finger C3H1-type profile. 164 192 IPR000571 GO:0046872
Pte17g00635 506 ProSiteProfiles Zinc finger C3H1-type profile. 438 466 IPR000571 GO:0046872
Pte17g00635 506 SMART c3hfinal6 438 465 IPR000571 GO:0046872
Pte17g00635 506 SMART c3hfinal6 392 419 IPR000571 GO:0046872
Pte17g00635 506 SMART c3hfinal6 211 238 IPR000571 GO:0046872
Pte17g00635 506 SMART c3hfinal6 164 191 IPR000571 GO:0046872
Pte17g00635 506 SMART c3hfinal6 257 284 IPR000571 GO:0046872
Pte17g00635 506 MobiDBLite consensus disorder prediction 470 506 - -
Pte17g00635 506 Gene3D - 206 290 - -
Pte17g00635 506 Gene3D - 391 476 - -
Pte17g00635 506 ProSiteProfiles Zinc finger C3H1-type profile. 392 420 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00635 Pte-Chr17 12656329 12659936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00635 388 471 C2H2 Transcription Factor Family AT3G02830 50.000 1.25e-21 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte17g00635 zf-CCCH 1.9e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00635 - - qsa:O6P43_030782 552.747