Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00634 ATGGCAGGGTCAGCAGCTTTTGGAGCAGAGCCTAATTCAGAGGTATTCTCATGGCTGAAGTCGCTACCTTCAGCACCAGAGTATCACCCAACGTTAGCTGAGTTTCAAGATCCAATTTCCTACATTTTTAAGATCGAGAAGGAAGCTTCCAAGTACGGAATCTGCAAAATCGTGCCCCCTGTTCCACCTTCCCCTAAGAAAACCATAATTCCTAACCTTAACCGGTCTTTGGCGGCAAGAGCTGCTTCCAGTGACTCCAAATCTCAGCCTACATTCACTACAAGGCAACAGCAGATCGGATTTTGTCCGAGGAAACTGAGACCCGTTAAACGACCCGTGTGGCAGAGTGGCGAGTACTACACTTTTCAGGAATTTGAAGCTAAGGCTAAAGCTTTCGAGAAGAGTTATCTCAGGAAATGTACTAAGAAAAGTGGTCTTTCTCCTTTGGAAATCGAGACCCTTTATTGGAAAGCCACTGCGGATAAGCCCTTTTCAGTTGAGTATGCTAATGACATGCCTGGCTCTGCTTTTGTGCCTGTTCGTGATAAGAGATGTAGGGAGGCAGGGGAGGGTGTTTCCCTTGGTGAAACAGCTTGGAATATGAGAGCGGTTAGCAGGGCCAATGGGTCTTTGTTGAGGTTTATGAAGGAGGAGATTCCGGGGGTTACTTCTCCTATGGTGTACATAGCTATGATGTTCAGTTGGTTTGCTTGGCATGTAGAAGATCATGACTTGCATAGCTTGAATTACTTGCATACGGGGGCTGGAAAGACTTGGTATGGTGTGCCCAGCGACGCTGCCTTTGCTTTCGAGGAAGTGGTCAGAGTTCATGGATATGGAGAGGAGATAAACCCTCTAGTTACTTTCGCTGTTCTTGGTGAGAAGACAACAGTGATGTCACCTGAAGTTCTCATTGGAGCAGGAGTTCCATGCTGTAGGTTAGTTCAAAATGCTGGGGAGTTTGTTGTCACATTTCCAAGAGCCTACCACACAGGGTTTAGTCATGGTCTTAATTGTGGGGAGGCAGCAAATATTGCAACACCTAAGTGGTTGATGTTTGCCAAAAATGCTGCTATTCGAAGAGCTTCAGTGAATTATCCTCCCATGGTGTCACATTTTCAGTTACTTTATGATCTTGCACTGGCATTATGTTCAAGAATTCCTGTTGCTATCAATGTTGAACCACGGAGTTCTAGGCTAAAAGATAAGAGAAAGGGTGAAGGAGACATGGTTGTTAAAGAATTATTTGTGCAGAATGTCGTACAGAACAACGAATTGCTTCATGTCTTAGGAAAAGGATCTTCTGTAATTCTTCTTCCTCATAGCTCTTCAGACATTTCTGTTTGCTCAAAATTACGTTTTGGCTCCAAGTTAAAACCCGACCATTCTTCTGGTTTATGTAGTCTTACAGCAGGGAGGAACGCCTCAAGGCCTTTTGTTTCTGATGACCTGACGGATGAAACAGAGCAAGTAAGCAGTTTTTTTGGTGTGAAAGGGAAGTTTGTGTCTCTATGTGAAAGGAACAGGAACTTTTCATCAAGTGCAATTGATAGTGTTCGCATTTCCAATTACAATACACGAAACCTAGATTGTAAAAGTGAAACCACTCAAGGGGATCAAATATCAGATCAAAGATTATTTTCATGTGTCACATGTGGGGTCATAAGTTTTGCTTGTGTTGCAATTCTTCAACCGAGAGAACCAGCTTCCAGGTACCTAATGTCTGCTGATTGTAGCTTCTTCAATGATTGGATTGTCGGTTCTGGAGTCACTGGCAAGAAGTTTGGTGCCCTAAATGAAGATGCTTTTGCTACGGAGCAGAATAACATTAGAGGATGGTTGGAAAAGAATGTCCCAGATGCTTTATATAATCGACCTGTCCAACCTATTGAAAAGCTGTGTCAGATTGAAGATCAAAATGATGGTATGACCTCAAATGCAGAGACACGGAGAGAATGCTCAGCTCTTGGCTTATTGGCTTCAGCATATGGAAATTCATCTGACTCTGAGGAAGATCAGGGTGAACCAAATGCTCTCGTTGATTCTATTGGACAAAGTTGTCCCTCTGGGAGTAGGTCCCAGCACAAGATTTCCTGTGCACCATCTCTTAGAACCTGCCACAATATTCCAATAAAAATGCATGATGGGCTGTCACGACTTGATGATAAAGGGGACATTTGTCCTAAAGTTGCTGGAAATGACACCGATTATGAATATCATAGGTCTAATTCTTTGCAAAAACCTGACCGAATTTTGCAGTTGAATGATGTGACTTCAGTAGAATCTGATGTCTCAGGGGAGGGTCTTAGAAACTCAAGGGGCAGGATGTCATATTTCCCTCCAAATCACCTGTGTGATATGGGAAAACCAGCACTGCACAATGCTGTCCTATTGCTTGATAAAAAAAGCACTCCATATGCATCACCTTCTGATGAGGATTCTTCCAGGATGCATGTTTTTTGTCTTGAGCATGCTGCAGAAGTAGAAAAGCAACTTCGTCCAATTGGAGGAGTGCATATATTGCTCTTATGTCATCCAGATTTTCCCAAGATAGAAGCTGAAGCAAAGTTTGTTGCTGGAGAACTAGGAATGCAATACTTGTGGAATGACATCTCATACGAGCATGCAACTCTAGAGGATAAGGGACGGATTCAGTCAGCACTGGATGGGGAGGAAGCTGATGCAGGTAATGGCGACTGGGCTGTAAAGCTAGGCATCAATCTGTTTTACAGTGCCTCTCTCAGCCGCTCTCCTCTCTACAGTAAGCAGATGCCTTACAATTCTGTTATATACAATGCATTTGGTCGTGGTACTCCTGCAAGCTCACCTATGGACTCCAAGCCCTATAGGAGGAGGGCTGGCAAGCAGAAAAAGGTAGTTGCAGGCAATTGGTGTGGAAAAGTATGGATGTCTTATCAAGTTCATCCTCTTCTAGGTAAGAATTGTGAAGATAACTATGACAATGATGACATAAGCTCCCATGGCTTGACGAGTCCAGATCAAAAACCTGAGAGAAGATCAGTTAGCACTCAAAAAGTCCAAACTGTCAGAAAATATAGTCGGAAGAGGAAACCAGCCTCTGCGAATGCATCAGATAGTATAGACCAATGCATTGATAGGGAAGATCAGTTTTCTGGTATTTCAATGGAAGATGACTCTTGTGATGATGCAACTGAGGATGAGTCTGAGCTGCCATTACGCAGGAGGATTCTTTGCGGCAAGCAAGTGAAGTCAGAAACCTTGCGGCAAATGAAACAGAAATCTGTCCCTGTGAAAAAACAGACATCTCGTCCTGTTAAATCAGGTACTCAGAAACTTATGAAGCCCAAAATATCTCAGCAAATGAAGCAGCCTCCTCGGTTGCTAAATAATCAAGTTAGAAATAGAGAACAGTTTATCTCAAGTGATGAAGAGGAGGAAGAGGGTGGACCAAGCACACGACTCCGAAAGAGAGTCCCAAAAGTTGCCAAGAGTGAAAGTAAACTAAAAGAGAAGCAGCAGAATAGCAGGAAAAAGGCAAGGACTGGTTCATCTCTAAAGGGTATAGATAGCTTCCATCAGTCGGACACAAATGACGGGAAAGCAGACTATCAATGCGACATTGAGGGATGCACTATGAGCTTTGGCTCAAAACAGGAGCTTTTGTTACACAAAAAAAATGTCTGCCCAGTGAAGGGCTGTGGAAAGAAGTTCTTCTCACATAAATATCTTGTACAGCACCGCCGGGTGCACCTGGATGACCGCCCCCTGCGGTGCCCTTGGAAGGGCTGCAAGATGTCATTCAAGTGGGCATGGGCTCGGACTGAACATATCCGGGTTCATACTGGTGCCCGGCCTTACGTCTGTGGTGAGCCAGGTTGCGGTCAGACTTTCAGATTTGTGTCTGATTTCAGTCGCCACAAGCGCAAGACAGGTCATTCAGCGAAGAAGACTCGGGGATGA 3942 0.4417 MAGSAAFGAEPNSEVFSWLKSLPSAPEYHPTLAEFQDPISYIFKIEKEASKYGICKIVPPVPPSPKKTIIPNLNRSLAARAASSDSKSQPTFTTRQQQIGFCPRKLRPVKRPVWQSGEYYTFQEFEAKAKAFEKSYLRKCTKKSGLSPLEIETLYWKATADKPFSVEYANDMPGSAFVPVRDKRCREAGEGVSLGETAWNMRAVSRANGSLLRFMKEEIPGVTSPMVYIAMMFSWFAWHVEDHDLHSLNYLHTGAGKTWYGVPSDAAFAFEEVVRVHGYGEEINPLVTFAVLGEKTTVMSPEVLIGAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGLNCGEAANIATPKWLMFAKNAAIRRASVNYPPMVSHFQLLYDLALALCSRIPVAINVEPRSSRLKDKRKGEGDMVVKELFVQNVVQNNELLHVLGKGSSVILLPHSSSDISVCSKLRFGSKLKPDHSSGLCSLTAGRNASRPFVSDDLTDETEQVSSFFGVKGKFVSLCERNRNFSSSAIDSVRISNYNTRNLDCKSETTQGDQISDQRLFSCVTCGVISFACVAILQPREPASRYLMSADCSFFNDWIVGSGVTGKKFGALNEDAFATEQNNIRGWLEKNVPDALYNRPVQPIEKLCQIEDQNDGMTSNAETRRECSALGLLASAYGNSSDSEEDQGEPNALVDSIGQSCPSGSRSQHKISCAPSLRTCHNIPIKMHDGLSRLDDKGDICPKVAGNDTDYEYHRSNSLQKPDRILQLNDVTSVESDVSGEGLRNSRGRMSYFPPNHLCDMGKPALHNAVLLLDKKSTPYASPSDEDSSRMHVFCLEHAAEVEKQLRPIGGVHILLLCHPDFPKIEAEAKFVAGELGMQYLWNDISYEHATLEDKGRIQSALDGEEADAGNGDWAVKLGINLFYSASLSRSPLYSKQMPYNSVIYNAFGRGTPASSPMDSKPYRRRAGKQKKVVAGNWCGKVWMSYQVHPLLGKNCEDNYDNDDISSHGLTSPDQKPERRSVSTQKVQTVRKYSRKRKPASANASDSIDQCIDREDQFSGISMEDDSCDDATEDESELPLRRRILCGKQVKSETLRQMKQKSVPVKKQTSRPVKSGTQKLMKPKISQQMKQPPRLLNNQVRNREQFISSDEEEEEGGPSTRLRKRVPKVAKSESKLKEKQQNSRKKARTGSSLKGIDSFHQSDTNDGKADYQCDIEGCTMSFGSKQELLLHKKNVCPVKGCGKKFFSHKYLVQHRRVHLDDRPLRCPWKGCKMSFKWAWARTEHIRVHTGARPYVCGEPGCGQTFRFVSDFSRHKRKTGHSAKKTRG* 1314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00634 1313 ProSiteProfiles JmjC domain profile. 193 362 IPR003347 -
Pte17g00634 1313 Gene3D Classic Zinc Finger 1217 1304 - -
Pte17g00634 1313 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 1246 - -
Pte17g00634 1313 FunFam Probable lysine-specific demethylase ELF6 1277 1306 - -
Pte17g00634 1313 SMART cupin_9 193 362 IPR003347 -
Pte17g00634 1313 SUPERFAMILY beta-beta-alpha zinc fingers 1260 1304 IPR036236 -
Pte17g00634 1313 MobiDBLite consensus disorder prediction 1172 1186 - -
Pte17g00634 1313 ProSitePatterns Zinc finger C2H2 type domain signature. 1252 1274 IPR013087 -
Pte17g00634 1313 SMART JmjN_1 24 65 IPR003349 -
Pte17g00634 1313 ProSiteProfiles JmjN domain profile. 25 66 IPR003349 -
Pte17g00634 1313 ProSiteProfiles Zinc finger C2H2 type domain profile. 1220 1249 IPR013087 -
Pte17g00634 1313 MobiDBLite consensus disorder prediction 1078 1193 - -
Pte17g00634 1313 SUPERFAMILY beta-beta-alpha zinc fingers 1220 1256 IPR036236 -
Pte17g00634 1313 Pfam jmjN domain 26 59 IPR003349 -
Pte17g00634 1313 MobiDBLite consensus disorder prediction 1082 1130 - -
Pte17g00634 1313 Gene3D Cupin 18 366 - -
Pte17g00634 1313 MobiDBLite consensus disorder prediction 990 1038 - -
Pte17g00634 1313 Pfam JmjC domain, hydroxylase 226 344 IPR003347 -
Pte17g00634 1313 ProSiteProfiles Zinc finger C2H2 type domain profile. 1280 1311 IPR013087 -
Pte17g00634 1313 SMART c2h2final6 1220 1244 IPR013087 -
Pte17g00634 1313 SMART c2h2final6 1280 1306 IPR013087 -
Pte17g00634 1313 SMART c2h2final6 1197 1219 IPR013087 -
Pte17g00634 1313 SMART c2h2final6 1250 1274 IPR013087 -
Pte17g00634 1313 MobiDBLite consensus disorder prediction 1140 1171 - -
Pte17g00634 1313 MobiDBLite consensus disorder prediction 664 694 - -
Pte17g00634 1313 ProSitePatterns Zinc finger C2H2 type domain signature. 1222 1244 IPR013087 -
Pte17g00634 1313 ProSiteProfiles Zinc finger C2H2 type domain profile. 1250 1279 IPR013087 -
Pte17g00634 1313 FunFam Probable lysine-specific demethylase ELF6 18 366 - -
Pte17g00634 1313 ProSitePatterns Zinc finger C2H2 type domain signature. 1282 1306 IPR013087 -
Pte17g00634 1313 SUPERFAMILY Clavaminate synthase-like 158 361 - -
Pte17g00634 1313 FunFam Probable lysine-specific demethylase ELF6 1247 1276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00634 Pte-Chr17 12614110 12620853 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00634 816 917 C2H2 Transcription Factor Family AT5G04240 36.275 3.08e-15 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte17g00634 JmjC 1e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00634 - - vvi:100241632 1516.9