Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00627 ATGGAACATACTTACAACAGAAAATTGTTTTGCAATAAACCAAATGTGGGTGGTGCAAGAAGTTATGCATACAGTGCACCATCAGCCAGTGATAATTTGTCAGCGAATACTGCATCTATGTTTGCAAATGAAGATGATGTTGTACCTTACGACCACGATGGATATGGGATAACTTGCTGCTGGCTAAAGACACCCAGGTTCAAGGATTCAAACATGTCTTCAGATGTTGAAGACCGTCCATTGATACCCAAAGATGTGGATGAGACAACTATGTATGGCTGGAGCATCCAGCAACCCAATGGTAGTCAAACATTAGAAACCCCCAGAAGTCTGCAAAGTAAATTCAGGCCAAAGTCGTTCGGTGATTTGGTAGGACAGAATATGGTGGCAAGGTCTCTTTTGAGTGCCATCTCAAAAGGAAGGATATCGTCATTCTATCTCTTCTATGGTCCGCGTGGCACAGGCAAAACTTCTGCGTCTAGAATCTTCGCGGCCGCATTGAATTGTCTCTCACTTGATGAATATAGGCCATGCTGTCTCTGCAGAGAATGTAAGTTGTTCTTCTCCGGGAGGAGTAAAGATGTAAAGGAAGTTGATTCTGTGAGAATCAATGCGAGAGACAGGATTAAATCCCTTGTCAAGAACGCATCCATGCTTCCTACCTCATCTCGTTTTAAGGTTTTCATACTTGATGAATGTCAATTACTACATGGGGAAACTTGGGCTACTCTTTTGAATAGCATAGTGAACCTCCCTCAAAATGTTGTCTTTCTGATGATTACTCCGGACTTGGATAGCCTTCCTAGGAGTGCTGTATCGCGGGCTCAAAAGTACCATTTTCCGAAAATAAAAGATGTGGACATTGCTAGCAGGTTGGGTAAAATCTGTAATGAAGAAGGTATTGACTTTGATCAGGAAGCTTTGGACTTCATTGCTTCTAAAGCTAATGGGTCCCTTAGGGATGCAGAGATGATGCTTGATCAGTTGAGTTTGCTAGGAAGAAGAATCACAGTTTCCTTAGTGTATGAGCTTACTGGGGTCGTTTCTGATGATGAGCTCCTAGACCTACTGGATTTATCTCTGTCATCTGACACTTCCAATACAGTCATAAGAGCCCGGGAGCTGATGAGGTCAAGGATAGATCCAATGCAACTCATATCACAGCTTGCAAATCTCATCATGGACATCCTTGCTGGCAAATATCAGGATGGTGGTTCAGAAGCCGGAAGTAGATTTTATATGAGACATAACTCTGAGATAGACATGCTGAAACTAAGTCATGCACTGAGAATACTTTCAGAAACAGAGAAACAACTGCGGGTGTCTAAAAATCAATCTACATGGTTCACTGCAGCCCTTCTACAGTTAAGCTCCATGGATATAAACGATGCCAAGTCATGCTTGAGAACATCATGTGATGTAGATGCAGATCTTTGCAGAACGTTATCTGAAGGAAAGAGGTTAAGTCATCTTGCTTCGCCTTCTCGTGTCAATAAGTCACACAGATCAGGAATGCTGGAGGATTGCAAAGGAACGTTAGACTCCATATGGAATAGAGCTACAGAGTTATGCGAACCCAAAGCTCTCAAACACTTCCTTAGGAAAAGAGGGAAGTTGGCTTATCTATGTATTAATGAAGGTGTCACAGTAGCCGAATTGGAGTTCCCCCATCGGGATTATGTATCTAGAGCTGAGAAGTCATGGAAATTGATTGCAAGTTCCCTGCAATCAATATTGGGTTGTAACATTGAGATAAGAGTCAATCTTGTGCCTTGTAAGTCTGATTCAAATCCGCAGAGAGCTTGGAGACCATCCTTCAAATTTTTCAGCTGTTCACGCAGATTGCGACATAAATCATCCTCGTCCGATGAGAAGAGAAGTGATTGTGAATATTTTAATAACTCCTCTCAGAAACCAATGATTGGCAGGCCTTCAACTTGTTTCACTGATTGTGAATGCCACTGCATTTCAGATTCAGTAAGGACTTTAAGGAATACTGACGGGAATTCATTAAGCTCAGGAAAAGGAACGTTGCACCAATCTTTTGGAGACCCAATGACATCTGTTCTTGCAATTGAATCATCAAAGGAAGTTAACATTGAAGCTTTGACTCAAGAACCAGATAGGCAGCCATACTGTTTTCCGAGATCACTTTGGTGTCATGAGAACTTTCATGCAGTTAATTCTTCCCAGAGGATATGTTCGGCTACTGAGCTAGGAAAGGAGTCGGTGTGGTCTGGCCCCAGGTACCCTGATTCTGAAGCATATAGCTGCACTAATAATCCATATGCGTCTTGCCCTAGTTCAGACAACTGCACGAAGGGCACCAGAGATGATGACAGTCAAAAGGAGGACTCCGATTTGCTTTGTTGGAGAACCGCAACATTGTCATCCAAGAAGCCAGGACAAGAGCAGCAGAAAAAGCATCTAGTGGGATGGGTTCTTCCTTGTGCCAGTGCAAGATAG 2466 0.4278 MEHTYNRKLFCNKPNVGGARSYAYSAPSASDNLSANTASMFANEDDVVPYDHDGYGITCCWLKTPRFKDSNMSSDVEDRPLIPKDVDETTMYGWSIQQPNGSQTLETPRSLQSKFRPKSFGDLVGQNMVARSLLSAISKGRISSFYLFYGPRGTGKTSASRIFAAALNCLSLDEYRPCCLCRECKLFFSGRSKDVKEVDSVRINARDRIKSLVKNASMLPTSSRFKVFILDECQLLHGETWATLLNSIVNLPQNVVFLMITPDLDSLPRSAVSRAQKYHFPKIKDVDIASRLGKICNEEGIDFDQEALDFIASKANGSLRDAEMMLDQLSLLGRRITVSLVYELTGVVSDDELLDLLDLSLSSDTSNTVIRARELMRSRIDPMQLISQLANLIMDILAGKYQDGGSEAGSRFYMRHNSEIDMLKLSHALRILSETEKQLRVSKNQSTWFTAALLQLSSMDINDAKSCLRTSCDVDADLCRTLSEGKRLSHLASPSRVNKSHRSGMLEDCKGTLDSIWNRATELCEPKALKHFLRKRGKLAYLCINEGVTVAELEFPHRDYVSRAEKSWKLIASSLQSILGCNIEIRVNLVPCKSDSNPQRAWRPSFKFFSCSRRLRHKSSSSDEKRSDCEYFNNSSQKPMIGRPSTCFTDCECHCISDSVRTLRNTDGNSLSSGKGTLHQSFGDPMTSVLAIESSKEVNIEALTQEPDRQPYCFPRSLWCHENFHAVNSSQRICSATELGKESVWSGPRYPDSEAYSCTNNPYASCPSSDNCTKGTRDDDSQKEDSDLLCWRTATLSSKKPGQEQQKKHLVGWVLPCASAR* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00627 821 CDD HLD_clamp_pol_III_gamma_tau 283 346 IPR045085 -
Pte17g00627 821 Gene3D - 347 460 - -
Pte17g00627 821 NCBIfam DNA polymerase III subunit gamma/tau 110 456 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Pte17g00627 821 SUPERFAMILY post-AAA+ oligomerization domain-like 353 454 IPR008921 GO:0003677|GO:0006260
Pte17g00627 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 333 IPR027417 -
Pte17g00627 821 FunFam DNA polymerase III subunit gamma/tau 284 346 - -
Pte17g00627 821 CDD AAA 124 274 - -
Pte17g00627 821 Pfam DNA polymerase III, delta subunit 126 283 - -
Pte17g00627 821 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 113 505 - -
Pte17g00627 821 Gene3D - 103 281 IPR027417 -
Pte17g00627 821 Gene3D - 285 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00627 Pte-Chr17 10962350 10966268 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00627 104 395 Core DNA Replication Machinery Family AT1G21690 25.589 8.28e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00627 - - cave:132175039 875.93