Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00626 ATGACGTCCGGCGAGGGTTTCCTGACCGATGAGCAGAGGGAATCGCTAAAAATAGCGAGCCAAAGTGCCGCGAGTCTGTCATCTTCGCCTAAGTCGCCATCAACTTTGCTTGCTGAGCATCATCTAAGAGCTGGTGCTGGTGCAGGCAGTAAGATACACTCTCACACGGCTGGGAATTCTGTGAAGCATGTACGTAGGTCGCATTCTGGAAAGTTCGTCCGCGTCAAGAAGGATGGTGCTGGTGGTAAAGGGACTTGGGGAAAGCTACTGGACACTGATGGTGATGTCCATATTGATCGGAATGACCCAAACTATGATAGTGGCGAGGAACCATACCAGCTTGTTGGGTCAACAGTTACAGACCCATTAGATGAATATAAGAGAGCTATTATGTCCACTATTGAGGAATACTTTAGCACTGGTGATGTGGATATTGCAGCATCTGATGTTCGAGAACTTGGATCAAGTGAATATCGTCCTTATTTCATCAAGCGACTGATTTCGGTAGCCATGGACCGGCATGATAAGGAGAAGGAAATGGCTTCGGTTCTGTTGTCAGCATTGTATGCTGATGTCCTCATGGACATACTGGATACAGTTGATATCCTTGCTCTATTCCTAGCACGTGCAGTTGTTGATGACATTCTTCCCCCAGCTTTCCTCTCCAGGGCACAGAAGGCTCTTCCAGAATCTTCAATCGGTGTTCAGGTTATCCAGAATGCTGTGAAGAGTTACTTATCTGCACCTCATCATGCAGAGCTTGTTGAGAGAAGATGGGGTGGTTGTACTCACATTACTGTTGAGGAAGTGAAGAAAAAGATTGCCAATTTGTTAAAGGAATATGTGGACAGTGGTGATACTTCTGAAGCATGTCGGTGTATATGGGAGTTAGGAGTTTCATTTTTCCACCATGAGGTTGTCAAGAGGGCTCTAATACTTGCTATGGAGACTCAAACAGCAGAACCACTTGTATTGAAGCTATTGAAAGAAGCAGCTGTAGAAGGACTTATTAGTTCTAGCCAAATGTTGAAAGGGTTTTCTCGATTGGCTGAGAGTCTCGATGATCTTGCCCTTGATATTCCATCAGCTAAGAACTTCTTCCATTCGTTGGTACCCAAGGCTATCTATGAAGAATGGCTTGACGCTTCCTTTATGAAACCCTCTGGTGAAGATGGGGATATAGAAGTTGAAGATCAAAAGCTGGGAAGGTACAAAAAGGAGGTTGTTACGGTAATTCACGAGTACTTTCTCTCAGATGACATTCCTGAATTGATCAGAAGCCTTGAAGATCTTGGGGCACCCCAGTATAACCCCATATTTTTGAAGAAGTTAATAACTCTTGCTATGGATCGAAAGAACAGGGAAAAAGAAATGGCATCAGTCCTACTATCTGCGCTTCACATAGAGATGTTCTCGACAGAGGACATAGCAAATGGTTTTGTTTTGCTTCTGGAGAGTGCAGAAGATACAGCATTGGATATCTTGGATGCTTCAAATGAGCTTGTACTATTCTTGGCTAGGGCTGTGATTGATGATGTCTTGGCCCCTCTGAATCTGGTAGAGATTTGCAGCAAGTTGCCGCCAAAATGCAGTGGTACTGAGACTGTGTGTATGGCCCGCTCTCTAATTGGTGCTCGTCATGCTGGTGAGAGGCTTCTGAGATGTTGGGGAGGTGGGACTGGATGGGCTGTGGAAGATGCCAAGGACAAAATCATAAAGTTGTTGGAAGAGTATGAAAGTGGGGGTGTTCTGAGCGAAGCATGTCAGTGTATTCTAGATCTCGCAATGCCTTTCTTCAATCACGAGGTAGTGAAGAAAGCTTTGGTTATGGCAATGGAGAAGAAGAATGATAGTTTACTGGATCTGCTTCAGGAATGCTTTAATGAGGGATTAATAACTATCAATCAGATGACGAAAGGGTTCACCAGGGTTAAGGATGGTCTTGACGACCTTGCTTTGGACATTCCAAATGCAAAAGAGAAATTTATCTTCTACAGAGAGTATGCCCAGAAAAAAGGTTGGCTGCTTCCATCATTTGAGCCCTCTGTGGTGGAAGCCTAA 2061 0.4459 MTSGEGFLTDEQRESLKIASQSAASLSSSPKSPSTLLAEHHLRAGAGAGSKIHSHTAGNSVKHVRRSHSGKFVRVKKDGAGGKGTWGKLLDTDGDVHIDRNDPNYDSGEEPYQLVGSTVTDPLDEYKRAIMSTIEEYFSTGDVDIAASDVRELGSSEYRPYFIKRLISVAMDRHDKEKEMASVLLSALYADVLMDILDTVDILALFLARAVVDDILPPAFLSRAQKALPESSIGVQVIQNAVKSYLSAPHHAELVERRWGGCTHITVEEVKKKIANLLKEYVDSGDTSEACRCIWELGVSFFHHEVVKRALILAMETQTAEPLVLKLLKEAAVEGLISSSQMLKGFSRLAESLDDLALDIPSAKNFFHSLVPKAIYEEWLDASFMKPSGEDGDIEVEDQKLGRYKKEVVTVIHEYFLSDDIPELIRSLEDLGAPQYNPIFLKKLITLAMDRKNREKEMASVLLSALHIEMFSTEDIANGFVLLLESAEDTALDILDASNELVLFLARAVIDDVLAPLNLVEICSKLPPKCSGTETVCMARSLIGARHAGERLLRCWGGGTGWAVEDAKDKIIKLLEEYESGGVLSEACQCILDLAMPFFNHEVVKKALVMAMEKKNDSLLDLLQECFNEGLITINQMTKGFTRVKDGLDDLALDIPNAKEKFIFYREYAQKKGWLLPSFEPSVVEA* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00626 686 ProSiteProfiles MI domain profile. 125 252 IPR003891 -
Pte17g00626 686 Pfam MA3 domain 405 514 IPR003891 -
Pte17g00626 686 Pfam MA3 domain 568 663 IPR003891 -
Pte17g00626 686 Pfam MA3 domain 270 381 IPR003891 -
Pte17g00626 686 Pfam MA3 domain 127 189 IPR003891 -
Pte17g00626 686 Gene3D - 118 247 - -
Pte17g00626 686 Gene3D - 392 546 - -
Pte17g00626 686 SUPERFAMILY ARM repeat 563 681 IPR016024 -
Pte17g00626 686 PANTHER PROGRAMMED CELL DEATH 4 3 680 IPR039778 GO:0045892
Pte17g00626 686 MobiDBLite consensus disorder prediction 1 34 - -
Pte17g00626 686 ProSiteProfiles MI domain profile. 269 390 IPR003891 -
Pte17g00626 686 MobiDBLite consensus disorder prediction 58 72 - -
Pte17g00626 686 SUPERFAMILY ARM repeat 404 559 IPR016024 -
Pte17g00626 686 MobiDBLite consensus disorder prediction 47 78 - -
Pte17g00626 686 SMART ma3_7 567 676 IPR003891 -
Pte17g00626 686 SMART ma3_7 270 381 IPR003891 -
Pte17g00626 686 SMART ma3_7 126 217 IPR003891 -
Pte17g00626 686 SMART ma3_7 404 515 IPR003891 -
Pte17g00626 686 FunFam programmed cell death protein 4 393 547 - -
Pte17g00626 686 ProSiteProfiles MI domain profile. 566 685 IPR003891 -
Pte17g00626 686 ProSiteProfiles MI domain profile. 403 524 IPR003891 -
Pte17g00626 686 SUPERFAMILY ARM repeat 266 386 IPR016024 -
Pte17g00626 686 Gene3D - 554 683 - -
Pte17g00626 686 Gene3D - 255 388 - -
Pte17g00626 686 SUPERFAMILY ARM repeat 123 262 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00626 Pte-Chr17 10927579 10931966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00626 570 662 Eukaryotic Initiation Factors Gene Family AT5G57870 31.250 3.00e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00626 - - gmx:100815729 1097.03