Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00625 ATGGCAGGCCTTTCACTCTGTTTCTTGTTCATCATCATCACTCTCTTCCCTCTCCATACCCTATCTCTCATTTCCTCCTCACCCGTCCTGCAAGACCCAGAAAGGGTCGTACAAGAGGTACACAGAAAAATGAATGCAACTAGGAGGAACTTGGGTTACCTATCTTGTGGGAGTGGGAATCCCATCGATGATTGCTGGAGGTGTGACCCCAATTGGGAGCAGAACCGGCAGAGATTAGCAGACTGTGCAATTGGGTTTGGCAAGAACGCCGTAGGTGGCAGGGATGGTAAAATCTACGTGGTCACGGATGCAGACAATGATAACCCAGTAAACCCCAAGCCAGGCACTCTACGCCATGCTGTGATTCAAGATGAGCCACTGTGGATCATATTTGCTAGAGACATGGTGATTCAATTGAAAGAGGAACTGATCATGAACTCGTTTAAAACCATCGATGGCAGAGGAGCAATTGTGCACATTGCTGGAGGTCCATGCATTACCATACAGTACGTGACGAACATCATAGTACATGGGATACATATACATGACTGCAAGCAAGGAGGGAATGCTATGGTGCGGGACTCTCCACGACACTACGGCTGGAGGACTGTATCGGACGGTGATGGAGTGTCGATCTTTGGAGCAAGTCATATATGGGTGGACCATTGCTCATTGTCTAACTGTGCTGATGGCTTGATTGATGCAATTGTTGGGTCCACTGCCATTACCATTTCAAACAACTACATGACACACCATGATAAAGTCATGCTTTTAGGTCATAGCGATACATTTGCTCAAGACAAGGGTATGCAGGTTACCATAGCTTTCAATCACTTCGGAGAAGGCCTTGTTCAGAGAATGCCAAGATGCAGACATGGTTACTTTCATGTGGTCAACAATGACTACACGCATTGGGAGATGTATGCCATTGGAGGGAGTGCTAATCCAACCATCAATAGCCAAGGGAACAGATTTGTTGCCCCTGACATTATGTTCAGCAAGGAGGTGACAAAACATGAAGATGCACCAGAAAGTGAATGGAGGAGTTGGAATTGGAGGTCAGAAGGAGACTTGTTGGTAAACGGTGCGTTTTTCACAGCATCTGGTGCTGGAGCTTCGTCTAGCTATGCAAAAGCGTCGAGCTTAAATGCCAGACCTTCTTCTCTTATCGGTCCGATGACAACGGGCGCGGGTGCATTGGACTGTCGAAAAGGGTCCCGCTGCTGA 1227 0.4751 MAGLSLCFLFIIITLFPLHTLSLISSSPVLQDPERVVQEVHRKMNATRRNLGYLSCGSGNPIDDCWRCDPNWEQNRQRLADCAIGFGKNAVGGRDGKIYVVTDADNDNPVNPKPGTLRHAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGAIVHIAGGPCITIQYVTNIIVHGIHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGASHIWVDHCSLSNCADGLIDAIVGSTAITISNNYMTHHDKVMLLGHSDTFAQDKGMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDIMFSKEVTKHEDAPESEWRSWNWRSEGDLLVNGAFFTASGAGASSSYAKASSLNARPSSLIGPMTTGAGALDCRKGSRC* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00625 408 FunFam Pectate lyase 59 401 - -
Pte17g00625 408 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Pte17g00625 408 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Pte17g00625 408 PRINTS Pollen allergen Amb family signature 82 99 IPR018082 -
Pte17g00625 408 PRINTS Pollen allergen Amb family signature 106 131 IPR018082 -
Pte17g00625 408 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Pte17g00625 408 PRINTS Pollen allergen Amb family signature 142 158 IPR018082 -
Pte17g00625 408 PRINTS Pollen allergen Amb family signature 206 227 IPR018082 -
Pte17g00625 408 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Pte17g00625 408 SUPERFAMILY Pectin lyase-like 45 399 IPR011050 -
Pte17g00625 408 Gene3D - 59 401 IPR012334 -
Pte17g00625 408 PANTHER PECTATE LYASE 18-RELATED 29 406 IPR045032 GO:0030570
Pte17g00625 408 Pfam Pectate lyase 149 325 IPR002022 -
Pte17g00625 408 SMART amb_all 134 331 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00625 Pte-Chr17 10889179 10891141 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00625 9 409 Polysaccharide Lyase AT4G24780 82.921 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00625 K01728 - pop:7453817 721.079