Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00613 ATGGCCACTCAGCTTCCTCTGTTTTCAGGCTTACCTTCTCTTTCACCTTCACCATTCCACCTTGCACGCTTACCCTTCGGAAACCTGAGTTGCAAACTCCTCCATTTCCAAAGGTATATCTCTACCAATGCTTACCCTTCTTTAGAGTTGGACTCATCAGTCTCCCCCGCAGTTCGGACCTTCTGGCAGTGGCTCAATGTTGAAGGTATTGTCTCTGCCAGGACACCAGTGAAGCCCGCTCCTGTACCTGAAGGTCTTGGACTGGTAGCCAAAAGAGACATTGCTCGAGGTGAAGTTGTTTTACAAGTACCCAAAAGGCTTTGGATAAACCCAGATGCAGTAGCTTCTTCAGATATTGGGAGTGTTTGCAGTGGCTTGAAGCCTTGGATGTCAGTTGCTCTGTTCCTGCTAAGAGAGAGATCCAGAGATGAATCTCCATGGAGATATTACTTCGATATTCTTCCAGAATCCACTGATTCTACTATATATTGGTCAGATGAGGAGCTTTCTGAGCTTGAAGGAACCCAACTTTTGAGTACAACGTTGAGTTTGAAAGAATATGTGAAGAGTGAATTTCTGAAAGTGGAACAAGAGATCGTTCTACGGTACAGGGATCTCTTCCCATTTCAGATAACACTGGATGACTTCCTCTGGGCTTTTGGGATGCTCAGATCAAGAGCATTTTCACGATTACGTGGTCAAAATCTTGTAATAGTTCCCTTTGCAGACTTGATCAATCACAGTTCAAGAGTAACCACGGAAGATCATGCCTATGAAATCAAAGGAGCAGCAGGACTCTTCTCTTGGGATATCCTTTTCTCTCTGCGCAGCCCACTTGCTGTAAAGGCTGGAGAACAGATTTATATCCAATACGACTTAAACAAGAGCAATGCTGAACTGGCTTTAGACTATGGCTTCATAGAACCACAGCAGGCAGAACGCAATGCATACACTTTGACATTAGGCATATCTGAATCAGACCCATTTTTTGAAGACAAATTGGATATTGCAGAGACAAATGGTTTTCAAAACACTGCATATTTCGACGTTTTCTTGGATCGTCCTCTACCAGAGGCTATGCTCCCATATCTGCGGTTAGTGGCATTAGGAGGTACGGATGCTTTCCTCTTAGAATCTTTGTTCAGAAACTCTATCTGGGACCATCTTCAGTTACCTGTAAGTCGTGCAAATGAGGAGCTAATATGCCGTGTAGTCCGTGACGCCTGCAAATCAGTTCTTTCCAACTATCGAACAACCATAGAAGAGGTAACATTTTATATTCGTATTAGGCTTCTTGCTTGCCACACAAAAAAGGAATTTTCAGTCTTGACAGCAAGATAA 1341 0.4355 MATQLPLFSGLPSLSPSPFHLARLPFGNLSCKLLHFQRYISTNAYPSLELDSSVSPAVRTFWQWLNVEGIVSARTPVKPAPVPEGLGLVAKRDIARGEVVLQVPKRLWINPDAVASSDIGSVCSGLKPWMSVALFLLRERSRDESPWRYYFDILPESTDSTIYWSDEELSELEGTQLLSTTLSLKEYVKSEFLKVEQEIVLRYRDLFPFQITLDDFLWAFGMLRSRAFSRLRGQNLVIVPFADLINHSSRVTTEDHAYEIKGAAGLFSWDILFSLRSPLAVKAGEQIYIQYDLNKSNAELALDYGFIEPQQAERNAYTLTLGISESDPFFEDKLDIAETNGFQNTAYFDVFLDRPLPEAMLPYLRLVALGGTDAFLLESLFRNSIWDHLQLPVSRANEELICRVVRDACKSVLSNYRTTIEEVTFYIRIRLLACHTKKEFSVLTAR* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00613 446 Pfam SET domain 85 291 IPR001214 GO:0005515
Pte17g00613 446 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 316 422 IPR036464 -
Pte17g00613 446 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 54 306 - -
Pte17g00613 446 CDD SET_RBCMT 67 307 IPR044431 GO:0016279|GO:0018022
Pte17g00613 446 Gene3D set domain protein methyltransferase, domain 1 54 307 - -
Pte17g00613 446 SUPERFAMILY SET domain 55 310 IPR046341 -
Pte17g00613 446 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 57 422 - -
Pte17g00613 446 Gene3D - 310 433 IPR036464 -
Pte17g00613 446 SMART set_7 73 298 IPR001214 GO:0005515
Pte17g00613 446 Pfam Rubisco LSMT substrate-binding 325 422 IPR015353 -
Pte17g00613 446 ProSiteProfiles SET domain profile. 68 292 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00613 Pte-Chr17 10534997 10537692 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00613 53 249 NAC Transcription Factor Family AT3G56570 26.214 1.20e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pte17g00613 SET 3.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00613 K00592 - qsa:O6P43_025500 613.994