Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00606 ATGGACTGGAATCTAAAAGCACCTTGGGATTTTACTGAACTGGACGAAGCAACTTTACCCAGCATAGGAACGGGAATGGTGAATGGGTCTATTACTAGATACGGGGTTAACAAAACTGAAGGTGAATTCTCGGTTGATTTGAAGCTTGGTCAGGTGGGTACTTCCCGTAATGAGTCTTCACAGAACTGGAAGGAGACGGGTGTCTCAAAAGTTGCATCTTCACCTTCAGGATCTTCCAAGAGAGCTCGAGCAGTTAACAATGGAACTCAGACAGTGGCTTGCCTTGTTGACGGTTGCAATTCAGACCTTAGTAATTGTAGGGACTACCATAGACGCCATAAGGTCTGTGAAATTCACTCCAAGACTCCTCAGGTCACAATCTGTGGCCAGAAGCAACGGTTCTGCCAGCAGTGTAGCAGGTTCCATTCGCTGGAGGAGTTTGACGAAGGAAAAAGAAGCTGCAGGAAACGTCTTGATGGCCACAACCGAAGGCGACGAAAGCCCCAGCCAGAACCTATCACCAGGCCTGCGACATTTTTGTCCAGTTACCAAGGTAGCCAGTTGTTACCGTTAGCAACTTCACATGTCTATCCTTCCACAGCTGTGGTGAGTCCTTCCTGGAGTACTGGGGTCGTGACTACTTCTGGGGCAGATGCAAGGCTCCAGAACCAGCATCAGCAGTTGCACTTGGTTGGCAAACATAACCAATTCATGAGATCTTCTAGGGCAGGCTACAAAGAAAGTAAGCGGTATACATTCTTACAAGAGGAAAACTCCTCGTTGTGTAACCAAAGTGGCGCGAGTCTTCAAGCTTCTCTCAATCAATCACTTATCAGAACGCATACCAATCTGTCAGAAAGTGGTGATCAGTTTAGACAAAAGATGTTCTGCGATGGCTTGACAAGTCAAGCTCAGAACTCCCGTTCATGTGCTCTCTCTCTTCTGTCATCACCACAGACACAGACAAATGATAACGGATTGAACCAAATGGTACAGCCGTTAGGACTGAGCTTGCAGGACAGCCATTTTGAGTCGGTTGACTCCGTCTTAGTTAGCAACGCTAACGGCGGTGACACTAACCTGCATGGCACAGGGCTGTATACCATGGGTTCGGATGAATCCCAAGGGAATGAAGCTGCCCCTCAACCGTTTCACTTTGCTTGGGACTAA 1170 0.4778 MDWNLKAPWDFTELDEATLPSIGTGMVNGSITRYGVNKTEGEFSVDLKLGQVGTSRNESSQNWKETGVSKVASSPSGSSKRARAVNNGTQTVACLVDGCNSDLSNCRDYHRRHKVCEIHSKTPQVTICGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPITRPATFLSSYQGSQLLPLATSHVYPSTAVVSPSWSTGVVTTSGADARLQNQHQQLHLVGKHNQFMRSSRAGYKESKRYTFLQEENSSLCNQSGASLQASLNQSLIRTHTNLSESGDQFRQKMFCDGLTSQAQNSRSCALSLLSSPQTQTNDNGLNQMVQPLGLSLQDSHFESVDSVLVSNANGGDTNLHGTGLYTMGSDESQGNEAAPQPFHFAWD* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00606 389 MobiDBLite consensus disorder prediction 158 177 - -
Pte17g00606 389 Pfam SBP domain 94 167 IPR004333 GO:0003677
Pte17g00606 389 FunFam Squamosa promoter-binding-like protein 14 85 155 - -
Pte17g00606 389 SUPERFAMILY SBT domain 92 173 IPR036893 GO:0003677|GO:0005634
Pte17g00606 389 Gene3D - 84 155 IPR036893 GO:0003677|GO:0005634
Pte17g00606 389 MobiDBLite consensus disorder prediction 54 84 - -
Pte17g00606 389 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 61 355 IPR044817 GO:0003677
Pte17g00606 389 ProSiteProfiles Zinc finger SBP-type profile. 91 168 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00606 Pte-Chr17 9914779 9918238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00606 1 390 SBP-box Gene Family AT5G50670 40.625 3.26e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte17g00606 SBP 7.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00606 - - qsa:O6P43_023553 453.751