Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00592 ATGGACATGATGACATCTGAACGTGTATGTTACGTCCACTGCAACTTCTGCAACACCATTTTAGCGGTTAGTGTGCCATGCGGCAGCTTATTCAACATAGTGACAGTTCGGTGCGGCCATTGTGCCAATTTGCTTTCAGTAAACATGGGATCATCCCTTCAAACGTATCCTCCTCCTCAAGATCCCCAGAAGCAGCAAAAGCAGGCCTCAAAGGAAGATCCAAGCAACAGACACTTCGCCTCATCTTCAAAATGCAACAAAATTACAGCATTTGAGTCTGTAGAAAATGGAGATACAAGAATGCCTCCTATGCGTCCTCCTGAAAAGAGACAACGCGTCCCTTCTGCATACAACCGTTTCATTAAGGAAGAAATCCAAAGAATTAAGGCTAGTAATCCAGATATCAGCCACAGAGAGGCCTTCAGCACAGCAGCAAAAAACTGGGCACATTTCCCTCACATTCACTTTGGACTGAAGCTGAATGGAAACAAGCAAGCAAAACTTGACCAGACTCTCTCGGGAGAAGGGCCTGCAAAATCTAAAGTTTCGTATTGA 555 0.4486 MDMMTSERVCYVHCNFCNTILAVSVPCGSLFNIVTVRCGHCANLLSVNMGSSLQTYPPPQDPQKQQKQASKEDPSNRHFASSSKCNKITAFESVENGDTRMPPMRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLNGNKQAKLDQTLSGEGPAKSKVSY* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00592 184 Gene3D High mobility group box domain 98 154 IPR036910 -
Pte17g00592 184 PANTHER PROTEIN YABBY 6-RELATED 5 167 IPR006780 GO:0007275
Pte17g00592 184 SUPERFAMILY HMG-box 100 151 IPR036910 -
Pte17g00592 184 Pfam YABBY protein 5 158 IPR006780 GO:0007275
Pte17g00592 184 MobiDBLite consensus disorder prediction 79 93 - -
Pte17g00592 184 CDD HMG-box_SF 112 148 - -
Pte17g00592 184 FunFam Axial regulator YABBY 103 173 - -
Pte17g00592 184 MobiDBLite consensus disorder prediction 53 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00592 Pte-Chr17 8927547 8932829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00592 4 175 C2C2-YABBY Transcription Factor Family AT1G08465 65.341 2.54e-77 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pte17g00592 YABBY 6.6e-73 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00592 K25796 - pvy:116122494 289.656