Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00583 ATGCCGGACATAAGGAAGTGGTTTATGAAATCACACGACGGGGGCAAAGGCAATGACAGCGATTCTAACACAACAAACCAGCCTAAACCTTCTGTTCCTTCTGCAAACTCACAACCTCAAAAAGCGGTGCAAGTAAGCAAAGAGAGTTCAGGAAGAAGGAAAACAAGCAAATATTTTTCTGCAGAAAAACAAAAGCCAAAGGGAGAAACAGAGGAACTTCCTATCAAGAGGAAGCAAAAGGACGATGATGAATTGGTCAAGCCCCCTCCTTCTATGAAAAATCATAAAATTGAAGATGACAACGACGACTTTGACATGCCCAGAGCTGCTGCAAAGAAGTCAGTATATGCCACTCCAAGTAAGAAATTTAAGAGTGTATATGGGAAGGAAGTTCCGCAGAAATGTGCAAATGTTGAGGAGAGTGATGAAGATGATGAAAAAGATAATGTATCACCTCTTAAATCTGCTGGAAGGGGTCGTGGTGGAAGGGGTTCATCATCAGCACCAGCTGGTGGGCGAGGCAGGGGTGGAGGAAGAGGTGGATTTATGAATTTTGGTGAAAGAAAAGAACCTCCAAATAAAGGACAAAAGGAAGTTCCTGAAGGTGCTCCAGATTGTTTAGCCGGTCTAACTTTTGTGATAAGTGGAACGCTGGACAGTTTGGAGCGAGAAGAAGCAGAAGATTTGATAAAACGCCATGGTGGTCGTGTCACTGGATCTGTTAGCAAGAAGACGAATTATCTTTTATGTGATGAAGATATCGGTGGCCGAAAATCTGCCAAAGCAAAAGAGCTGGGTACTGCCTTCCTCACTGAAGATGGATTGTTTGATATGATACGGGCATCAAAGCCATCAAAAGTTTCTGTAAAACAAGAACCGAAGAAAATGGAGGATAAGGCTTCTGCATCTTTTTCTAAGGGTAGCCCCCAGAAAGTACAAGCAAAGAATTCTCCTCTGTCTATGCCTAAAGCTCAAAGTGCAAATGATTCATCGTTGATTTGGACAGAAAAGTATAGGCCAAAGGTTCCAAATGACATGGTTGGAAACCAAGCATTGGTAAAGCAACTTCATGATTGGTTGGCACATTGGCATGAGCAATTTCTTGATGGTGCAAATGCAAAAAAAGGTAAAAAGCAAAGTGATTCTGGTGCTAAAAAGGCGGTGCTATTAAGTGGAACACCTGGTATTGGGAAAACGACTTCAGCAAAATTAGTCAGTCAGATGCTAGGGTTTCAGGCAATTGAGGTTAATGCTAGTGACAACCGTGGAAAGGCTGATTCCAAAATTGAGAAAGGAATTTCTGGAAGCAATGCAAATTCTATTAAGGAGCTTGTAAGCAACGAGGCCCTTAGTACCAACATGGATAGGTCAAAACATCCCAAAACTGTGCTTATTATGGATGAAGTTGACGGCATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGTATCAAGACCTCAAAAATACCTATCATTTGTATTTGCAATGACCGTTACAATCAGAAACTGAAAAGTCTTGTTAACTATTGTCTGCTACTTACCTTTCGAAAACCAACAAAACATCAGATGGCGAAGAGGTTAATGCAGGTTGCAAATTGTGAGGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAATTAGCAGAGAGAGTAAATGGAGATATGCGTATGGCTCTAAACCACTTACAGTATATGAGCCTCTCAATGTCAGTCATCAACTACGATAATATCAGGCAGCGTCTACTTGCCAGTTCAAAAGACGAAGACATTTCACCATTTACGGCAGTCGACAAGCTTTTTGGATTTAATGCTGGAAGGTTAAAAATGGATGAGCGTATTGACCTTGGAATGAGTGACCCTGACCTCGTTCCTCTTCTCATCCAGGAAAACTATATTAACTATAGGCCCAGCTCAACTGGTAAAGAAGACGGCGACATTACACGGATGAAGTTGATTGCCCAAGCTGCTGAGTCTATTGCGGATGGAGATATAGTAAATGTACAGATTAGGAGATATCGGCAGTGGCAGCTCTCTCAAACTAGCTGTTTTGCTTCCTCCATTGTTCCTGCATCGTTGTTGCATGGACAAAGGGAGATACTTGAACAGGGAGAACGGAACTACAATAGATTTGGTGGGTGGCTTGGAAAGAACTCAACGATGGGAAAAAATATAAGGCTTTTAGAAGATTTGCATCTCCATGTTCTTGCTTCTCGTGAATCTAGTTCAGGCAGGGGAACTCTCCGTTTGGAATACCTGACACTTCTACTCAAGCGATTAACCGAGCCACTCCATACCTTGCCTAAGGATGAAGCTGTTCAGAAAGTTGTGCATTTTATGAATGAATACTCGATTAGTCAAGAAGACTTTGATACGATAGTTGAATTATCAAAATTTAAGGGCCATCCAAATCCACTGGATGGGGTACAGCCTGCAGTTAAAGCAGCTTTAACAAAAGCATACAAAGAAGGAAGCAAAATGAGGATGGTGAAAGCTGCAGATCTGGTGACACTTCCTGGAGTAAAAAAGACTCCTAAGAAAAGGATTGCTGCAATCTTGGAACCTCCGCCTGAAGGTCTGGGGGAGGTTGGTGGTGAGCTATTGACAGAAAGCGAAGAGGATTCTTCAGATACAGAGGAATCTGTAGACGGCAACAGAACTGGTGAAAAGCTGCGGCAGGAACTTCAGAGCTTAAATTCTAAAGCAACACAAGTGCAGTTGGATTTGAAAGGAACCATAGCTGGAACTTCAAGTGGCAAGAGCACATCTACTGGTACTGGTAGAGGTAGGGGTGGTTCTACTTCCGCAAAGAAGGAACGTGAGGCTGGTTCACGTTCTAGTGCTAAGAGAAAGAGATGA 2862 0.4263 MPDIRKWFMKSHDGGKGNDSDSNTTNQPKPSVPSANSQPQKAVQVSKESSGRRKTSKYFSAEKQKPKGETEELPIKRKQKDDDELVKPPPSMKNHKIEDDNDDFDMPRAAAKKSVYATPSKKFKSVYGKEVPQKCANVEESDEDDEKDNVSPLKSAGRGRGGRGSSSAPAGGRGRGGGRGGFMNFGERKEPPNKGQKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSAKAKELGTAFLTEDGLFDMIRASKPSKVSVKQEPKKMEDKASASFSKGSPQKVQAKNSPLSMPKAQSANDSSLIWTEKYRPKVPNDMVGNQALVKQLHDWLAHWHEQFLDGANAKKGKKQSDSGAKKAVLLSGTPGIGKTTSAKLVSQMLGFQAIEVNASDNRGKADSKIEKGISGSNANSIKELVSNEALSTNMDRSKHPKTVLIMDEVDGMSAGDRGGVADLIASIKTSKIPIICICNDRYNQKLKSLVNYCLLLTFRKPTKHQMAKRLMQVANCEGLQVNEIALEELAERVNGDMRMALNHLQYMSLSMSVINYDNIRQRLLASSKDEDISPFTAVDKLFGFNAGRLKMDERIDLGMSDPDLVPLLIQENYINYRPSSTGKEDGDITRMKLIAQAAESIADGDIVNVQIRRYRQWQLSQTSCFASSIVPASLLHGQREILEQGERNYNRFGGWLGKNSTMGKNIRLLEDLHLHVLASRESSSGRGTLRLEYLTLLLKRLTEPLHTLPKDEAVQKVVHFMNEYSISQEDFDTIVELSKFKGHPNPLDGVQPAVKAALTKAYKEGSKMRMVKAADLVTLPGVKKTPKKRIAAILEPPPEGLGEVGGELLTESEEDSSDTEESVDGNRTGEKLRQELQSLNSKATQVQLDLKGTIAGTSSGKSTSTGTGRGRGGSTSAKKEREAGSRSSAKRKR* 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00583 953 Gene3D - 521 591 - -
Pte17g00583 953 Coils Coil 889 909 - -
Pte17g00583 953 Pfam Replication factor RFC1 C terminal domain 661 823 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Pte17g00583 953 MobiDBLite consensus disorder prediction 47 109 - -
Pte17g00583 953 FunFam Replication factor C subunit 1 593 702 - -
Pte17g00583 953 SMART BRCT_7 204 282 IPR001357 -
Pte17g00583 953 CDD AAA 381 521 - -
Pte17g00583 953 FunFam Replication factor C subunit 1 521 592 - -
Pte17g00583 953 SUPERFAMILY post-AAA+ oligomerization domain-like 592 737 IPR008921 GO:0003677|GO:0006260
Pte17g00583 953 MobiDBLite consensus disorder prediction 892 932 - -
Pte17g00583 953 SMART AAA_5 384 537 IPR003593 GO:0016887
Pte17g00583 953 CDD BRCT_RFC1 202 280 - -
Pte17g00583 953 PIRSF RFC1 125 924 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Pte17g00583 953 PIRSF RFC1 1 175 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Pte17g00583 953 Gene3D BRCT domain 179 281 IPR036420 -
Pte17g00583 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 581 IPR027417 -
Pte17g00583 953 Pfam ATPase family associated with various cellular activities (AAA) 388 500 IPR003959 GO:0005524|GO:0016887
Pte17g00583 953 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 20 937 - -
Pte17g00583 953 MobiDBLite consensus disorder prediction 1 17 - -
Pte17g00583 953 FunFam Replication factor C subunit 1 332 520 - -
Pte17g00583 953 FunFam Replication factor C subunit 1 178 281 - -
Pte17g00583 953 MobiDBLite consensus disorder prediction 853 953 - -
Pte17g00583 953 Pfam BRCA1 C Terminus (BRCT) domain 204 279 IPR001357 -
Pte17g00583 953 Gene3D - 593 702 - -
Pte17g00583 953 Gene3D - 332 520 IPR027417 -
Pte17g00583 953 MobiDBLite consensus disorder prediction 18 46 - -
Pte17g00583 953 ProSiteProfiles BRCT domain profile. 202 283 IPR001357 -
Pte17g00583 953 MobiDBLite consensus disorder prediction 303 328 - -
Pte17g00583 953 MobiDBLite consensus disorder prediction 1 203 - -
Pte17g00583 953 SUPERFAMILY BRCT domain 202 284 IPR036420 -
Pte17g00583 953 MobiDBLite consensus disorder prediction 284 328 - -
Pte17g00583 953 MobiDBLite consensus disorder prediction 287 301 - -
Pte17g00583 953 CDD HLD_clamp_RFC 521 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00583 Pte-Chr17 8675615 8684077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00583 1 904 Core DNA Replication Machinery Family AT5G22010 68.553 0.0 1127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00583 K10754 - cave:132163425 1279.23