Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00582 ATGGAGTTTCCGGGTATGGAGGAGACAAAGAAGTCCGAGGCTCATTTGAGTTCAGCTGCTGCTTTTGTGGAGGGCGGAATCCAGGAAGCTTGTGATGATGCTTGCAGTATTTGTCTCGAAGCATTTTGTGACAGTGATCCCTCGACGGTGACGAGCTGCAAGCATGAATTTCATCTTCAATGTATCCTGGAGTGGTGTCAAAGGAGCTCCCAGTGCCCCATGTGCTGGCAATCAATCAGCCTGAAAGATCCAACCAGTCAGGAGCTACTGGATGCAGTGGAAAAGGAAAGAAACTTGAGGCTCAATCCACCTAGACATGCCACGATATTCCACCATCCCGCTTTAGGGGATTTTGAGTTGCAGCATCTGCCAGTTGGTACAAGTGATGCTGAACTAGAGGAGAGGATAATCCAGCACTTAGCTGCTGCAACTGCAATGGGGCGAGCTCGCCACATTGCTAGAAGGGAAGGCCAGAGAATTAGGTCATCAGCTCACAGTCATCCACGTTTCTTGGTATTCTCTACTCCCAATCCACATTCTGTAGCCCCAATTTCAGCTCAGAATAGGGACGGTGAGTTAACTGCTGCAGTTGGTGGAGCCACTCTGTCTCCTCCTCCTCCTTCAGTTGGAGAAGAATCTTCACTCGGGTCAGCTGCTATTCATCCAGTCCATGCTGATGAAGTCTTTGCCTCAGGATCTGGATCTACTGTTGCTGCTGCTAATCAAGAAGGAACTTCCTTGAATGTTAGAAGTTCTCCCCGTCACTCATCTCCAAATAGCCAGGATAAAGAAGGAGCGTCTGAACTACAATCCTTTTCAGAATCTCTTAAGTCGAGATTTAATGCATTGTCAATGAAATACAGAGAGTCTATATCCAAAGGCACAAGGGGTTGGAAAGAAAAATGGTTCTCTCGTAATACATCCACAGAAGAAATTGTTTCTGAAGTTAGAAGAGAGGTAAATGCTGGGATTTCAACTGTATCACGCGTGATGGAGCGTTTGGAAACCAGAGATAACAATAGATCCAATGGAACCCCTTTAACATCTGGTATTGAGGATGGTTCTTTTCGAGGATCAAACAATCAGCAGTGTTCAGTGACTGCCAATGGAAGTCCTCCAAGAGATGGTAATGTTCCAGCTTCATGTCCGACAGGTTCTAGACAAACTTAA 1170 0.4624 MEFPGMEETKKSEAHLSSAAAFVEGGIQEACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLDAVEKERNLRLNPPRHATIFHHPALGDFELQHLPVGTSDAELEERIIQHLAAATAMGRARHIARREGQRIRSSAHSHPRFLVFSTPNPHSVAPISAQNRDGELTAAVGGATLSPPPPSVGEESSLGSAAIHPVHADEVFASGSGSTVAAANQEGTSLNVRSSPRHSSPNSQDKEGASELQSFSESLKSRFNALSMKYRESISKGTRGWKEKWFSRNTSTEEIVSEVRREVNAGISTVSRVMERLETRDNNRSNGTPLTSGIEDGSFRGSNNQQCSVTANGSPPRDGNVPASCPTGSRQT* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00582 389 MobiDBLite consensus disorder prediction 196 216 - -
Pte17g00582 389 MobiDBLite consensus disorder prediction 337 389 - -
Pte17g00582 389 ProSiteProfiles Zinc finger RING-type profile. 35 75 IPR001841 -
Pte17g00582 389 MobiDBLite consensus disorder prediction 243 272 - -
Pte17g00582 389 MobiDBLite consensus disorder prediction 340 374 - -
Pte17g00582 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 93 IPR013083 -
Pte17g00582 389 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 11 84 - -
Pte17g00582 389 FunFam E3 ubiquitin-protein ligase RHF2A 6 109 - -
Pte17g00582 389 SMART ring_2 35 75 IPR001841 -
Pte17g00582 389 SUPERFAMILY RING/U-box 27 83 - -
Pte17g00582 389 Pfam Ring finger domain 34 75 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00582 Pte-Chr17 8669836 8674560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00582 32 83 C3H Transcription Factor Family AT4G00335 44.231 4.95e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00582 K19043 - gmx:100814908 519.62