Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00558 ATGGAAATCGAGGTTCTGTTGACTACTAGGCATGATCATGCTATAATGGCATTAATCAAAATTTTATTCATTATTGCTTTTATGTGGGCTCCAATGGATGTGATGGGTGGCGGTGGAAATGCCAGTACTTCTTCATCGAGGCCTAGTGTTGTGAATATTGGAGCGCTATTTACTTATGATTCAGTCATTGGAAGATCTGCCAGACCTGCTATTGAAGCTGCAGTTGAAGATGTTAATGCTGATTCAAGCGTCCTTGGAAGGACAGACTTGAAAGTTATTTTTCATGACACAAACTGCAGTGGGTTTCTTGGGACAATAGAAGCGCTGCAGTTAATGGAGAATGAAGTGGTTGCAGCTATTGGTCCACAATCTTCTGGCATAGCTCATGTCATCTCCCATGTAGTCAATGAACTCCATGTTCCTCTACTATCGTTTGGAGCCACAGATCCCACACTATCTGCTTTGCAGTATCCATTTTTCATTCGAACTACACAAAGTGACTATTTTCAAATGTATGGTATAGCTGATTTTGTTGATTACTATGGATGGAGAGAGGTAATTGCAATCTTTGTTGATGATGAATATGGACGAAGTGGGATTTCAGTATTGGGTGATGCTCTAGCAAAAAAGAGAGGAAAACTCGCTTATAAGGCTGCCTTCCCTCCAGGAGCCACCAAAAGTCTCATCAATGACTTGTTGGTTCAAGTGAACTTAATGGAATCTCGAGTGTACGTTCTACATGTTAATCCTGACTCTGGTTTGTCCATTTTTTCTATTGCCAAACACCTTGGGATGACGGGGAGTGGCTATGTCTGGATTGCAACAGATTGGCTTCCATCAGTGCTGGATTCAATACAACCAGCTGATGCTGACACAATGAATCTATTGCAAGGGGTTATTGCTTTTCGCCAACATACCCCAGATAGTGATTTGAAAAAGAAATTTGTGTCAAGATGGAATAACCTAAAAGACAAACAGACTGCAGGCTTCAATTCTTATGCACTATACGCTTATGATTCTGTCTGGTTAGCTGCCCGTGCTCTCGAAGTCTTCTTTAGTGAAGGGGGAAATATATCTTTTTCAAGTATCCCAAGGTTGCATGATACAAATGGAAGCTCATTGAATTTGCAATCGCTCCGTACTTTTAATGACGGTGAACGGTTTCTGCGAACAGTTCTAAGGATGAATTTCACAGGTTTAGGCGGACAGGTTCAGTTTGATTCAGAAAAAAATTTGGTTAATCCTGCTTATGATATCCTAAACATTGGTGGAAGTGGATCCCGAATCATTGGTTATTGGTCTAATTATTCTCACCTATCGGTCATTCTACCTGAAATATTGTACACCAAACCTCCCAATATTTCAACAAGTAATCAACATCTGTACAGTGTAATATGGCCAGGAGAAACTGCATCTAAACCGAAGGGATGGGTATTTCCTAACAATGGGAAGCCACTGCGCATAGCTGTTCCTTACCGAGTGAGCTTCAAGGAGTTTGTTTCCAAAGATAAGGACCAAGGTGTGAAGGGTTATTGCATTGACGTCTTCGAAGCTGCTTTAAAATTGTTACCATATCCTGTTCCGCGGACGTATATACTTTATGGACATGGAGATAAAAATCCTGACTACAATGATCTCGTCAATCAGGTTGCTCTTAACAATTTTGATGCTGCAGTTGGAGATGTTACCATTGTTACCAATAGAACGAGGATAGTGGATTTTACGCAACCTTATATGGCATCAGGACTTGTAGTTGTTGTTCCTGTCAAGGGGGAGGAGTCAAGCCCTTGGGCTTTCCTTAAGCCATTTACTCTCCCAATGTGGTTGGTTACTGGTGCATTCTTCCTTTTCGTGGGAGCTGTTGTATGGATACTTGAGCACAGGATCAATCCGGAGTTCCGTGGTCCTCCAAAGCAACAACTTATGACAATTTTCTGGTTTAGCTTTTCAACAATGTTTTTCTCACATAGAGAAAACACTATAGGCACTCTTGGAAGACTGGTGCTTATAATATGGCTATTTGTAGTGCTGATTATTAATTCAAGTTACACAGCTAGTTTGACGTCAATTCTCACAGTGCAGCAATTGACATCAGGAATCGAAGGTATTCAGAGTCTTATCTCAAGTACCGATCCAATTGGGGTTCAAGATGGCTCATTTACGCGCAAGTATCTAGTGGACGAGCTCAACATACAAGAATCTAGGCTTACTAGTTTAAGAAGTCCGGAGGATTACATCACTGCACTTAAGCGTGGACCAAGTAATGGAGGGGTGGCGGCCATTGTTGAAGAACTTCCTTATGTTGAGCTTTTCTTGTACAACGCCAAATGCCAATTCAGAACTGTGGGACAAGAGTTCACTAAAAGTGGCTGGGGATTTGCATTCCAGAGGGATTCTCCCCTTGCAGTTGACCTTTCGACTGCCATTCTTCAACTCTCTGAGAATGGTGAGCTGCAAAAAATTAATGATAAGTGGCTCTCACGTGGAGAGTGTTCCATGCAAATCAGTGAAGTTGATGATAACAGGTTATCTCTGAAGAGTTTCTGGGGTCTTTTCCTCATATGTGGCGCTGCATGCTTCCTAGCTTTGATTGTGTTCTTCAGTAGAGTAGTTTATCAATATCTAAAATTCAGGCCAGAGGAGGATCAGGTTCCGGAGGAAATCCAAACTCCCAGGTCTAATAGACGGACAACCAGGTCGACTAGCTTTAAAGATTTAATTGAGTTTGTAGATAAGAAGGAAGCAGAGATAAAGGAGATTCTCAGGAGAAAGAGTAGTGACAGAAGACACCATAGTCAGAGCTCGGATGGCCTGCCCAGCTAA 2823 0.4183 MEIEVLLTTRHDHAIMALIKILFIIAFMWAPMDVMGGGGNASTSSSRPSVVNIGALFTYDSVIGRSARPAIEAAVEDVNADSSVLGRTDLKVIFHDTNCSGFLGTIEALQLMENEVVAAIGPQSSGIAHVISHVVNELHVPLLSFGATDPTLSALQYPFFIRTTQSDYFQMYGIADFVDYYGWREVIAIFVDDEYGRSGISVLGDALAKKRGKLAYKAAFPPGATKSLINDLLVQVNLMESRVYVLHVNPDSGLSIFSIAKHLGMTGSGYVWIATDWLPSVLDSIQPADADTMNLLQGVIAFRQHTPDSDLKKKFVSRWNNLKDKQTAGFNSYALYAYDSVWLAARALEVFFSEGGNISFSSIPRLHDTNGSSLNLQSLRTFNDGERFLRTVLRMNFTGLGGQVQFDSEKNLVNPAYDILNIGGSGSRIIGYWSNYSHLSVILPEILYTKPPNISTSNQHLYSVIWPGETASKPKGWVFPNNGKPLRIAVPYRVSFKEFVSKDKDQGVKGYCIDVFEAALKLLPYPVPRTYILYGHGDKNPDYNDLVNQVALNNFDAAVGDVTIVTNRTRIVDFTQPYMASGLVVVVPVKGEESSPWAFLKPFTLPMWLVTGAFFLFVGAVVWILEHRINPEFRGPPKQQLMTIFWFSFSTMFFSHRENTIGTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSGIEGIQSLISSTDPIGVQDGSFTRKYLVDELNIQESRLTSLRSPEDYITALKRGPSNGGVAAIVEELPYVELFLYNAKCQFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGELQKINDKWLSRGECSMQISEVDDNRLSLKSFWGLFLICGAACFLALIVFFSRVVYQYLKFRPEEDQVPEEIQTPRSNRRTTRSTSFKDLIEFVDKKEAEIKEILRRKSSDRRHHSQSSDGLPS* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00558 940 Pfam Receptor family ligand binding region 68 423 IPR001828 -
Pte17g00558 940 PRINTS Metabotropic glutamate GPCR signature 119 145 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pte17g00558 940 PRINTS Metabotropic glutamate GPCR signature 151 170 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pte17g00558 940 PRINTS Metabotropic glutamate GPCR signature 170 186 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pte17g00558 940 PRINTS Metabotropic glutamate GPCR signature 186 203 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pte17g00558 940 SUPERFAMILY Periplasmic binding protein-like I 45 478 IPR028082 -
Pte17g00558 940 Gene3D - 70 414 - -
Pte17g00558 940 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 124 152 - -
Pte17g00558 940 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 337 349 - -
Pte17g00558 940 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 64 80 - -
Pte17g00558 940 MobiDBLite consensus disorder prediction 921 940 - -
Pte17g00558 940 Pfam Ligand-gated ion channel 828 859 IPR001320 GO:0015276|GO:0016020
Pte17g00558 940 Gene3D - 721 829 - -
Pte17g00558 940 Gene3D - 166 439 - -
Pte17g00558 940 SMART GluR_14 487 828 IPR001320 GO:0015276|GO:0016020
Pte17g00558 940 CDD PBP1_GABAb_receptor_plant 52 443 IPR044440 -
Pte17g00558 940 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 51 895 IPR015683 -
Pte17g00558 940 CDD GluR_Plant 484 826 - -
Pte17g00558 940 PIRSF IGluLR_plant 14 938 IPR017103 -
Pte17g00558 940 Gene3D - 596 716 - -
Pte17g00558 940 Gene3D - 481 595 - -
Pte17g00558 940 FunFam Glutamate receptor 596 726 - -
Pte17g00558 940 Pfam Bacterial extracellular solute-binding proteins, family 3 496 827 IPR001638 -
Pte17g00558 940 SUPERFAMILY Periplasmic binding protein-like II 461 827 - -
Pte17g00558 940 FunFam Glutamate receptor 166 330 - -
Pte17g00558 940 FunFam Glutamate receptor 722 830 - -
Pte17g00558 940 FunFam Glutamate receptor 481 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00558 Pte-Chr17 7963070 7968655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00558 47 796 Ion Channels AT1G05200 68.975 0.0 1122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00558 K05387 - qsa:O6P43_000581 1435.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00558 17 7963070 7968655 Pte17g00558 17 7963070 7968655 RCT