Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00557 ATGCCCTCAATGATTGGAAGGAACGGAAGCTTTGGTGGATATGGATCATCCTCAACCTCCGGGCTCACTCTTGGTCAGCCAAACTTGATGGAAGGTCAGCTCCAATCGCTAGACATGACTCAAAATACATCAGAGAGTGACATCCCCAGAATCAGAGATGATGACTTCGACAGTGCCACAAAGTCTGGCAGCGAAAACCACGAAGCCGCCTCCGGTGATGATCAAGACCCACTTCCCAAGAAGAAGCGCTACCATCGCCACACTCAACATCAGATCCAGGAAATGGAAGCGTTTTTCAAAGAGTGTCCACACCCAGATGACAAGCAAAGAAAGGAACTGAGCCGAGAGTTAGGATTGGAGCCACTGCAAGTCAAGTTTTGGTTCCAAAATAAACGCACGCAGATGAAGACACAACATGAGCGTCAGGAGAATGCGCAGCTTAGGGCAGAGAACGAAAAGCTCCGTGCTGACAACATGAGATTCAGAGAAGCTCTTAGCAACGCGTCTTGTCCCAACTGTGGTGGACCAACCGCTATAGGAGAAATGTCATTTGATGAACATCATCTTAGACTCGAAAATGCTCGGTTGAGAGAAGAGATTGATAGGATCTCAGCTATTGCTGCTAAGTACGTAGGAAAGCCTGCTTTGAGCTTTCCACTTCTCTCATCTCCAATTCCTCCACGACCATTAGAGCTTGCTGGTAGTCCATTCGGAGGTCAGCCTAGCATTGGCGGAGATATGTATGGAGCAGGAGACCTTCTTAGGTCAATTAGTGCACCCACTGAAGCAGATAAACCTGTGATCATTGAACTCGCAGTGGCGGCTATGGAGGAGCTGATCAGAATGGCACAAATGGGAGAGCCCTTGTGGATGACAAGCATTGATGGCGCTAGCTCTGTACTAAACGAAGACGAATACATCAGGTCGTTTCCTAGAGGAATTGGTCCAAAACCCACTGGCTTTAGATGCGAAGCTTCAAGGGAGATTGCTGTGGTTATCATGAACCATATTAACCTTGTCGAGATCCTAATGGATGTGAACCAATGGTCCACTGTATTCTCTGGTATCGTTTCTAGGGCAATGACTCTAGAAGTTCTGTCAACTGGGGTGGCTGGAAACTACAATGGCGCCCTACAAGTGATGACCGCAGAGTTCCAAGTGCCCTCACCCCTTGTCCCAACCCGTGAGAGTTATTTCGTAAGGTACTGTAAACAGCATGCTGAAGGGACATGGGCAGTGGTAGATGTATCCTTGGACAGTTTGCGACCCAGTCCTGTAGTGAGATGTCGAAGAAGAGCTTCTGGTTGTTTAATACAGGAAATGCCCAATGGATACTCAAAGGTCACCTGGGTGGAGCATTTAGAATTGGATGACCGAGGGGTTCATAATCTATACAAACAACTAGTCAGCTCTGGCCATGCATTTGGTGCAAAACGTTGGATTGCTACCTTAGACCGACAATGCGAGCGCCTTGCTAGTGCCATGGCTAGCAACATTCCCACCGGAGATGTTGGCGTGATAACAAATCAAGAAGGACGGAAAAGTATGTTGAAACTGGCTGAGAGAATGGTGATCAGCTTTTGTGCGGGTGTGAGTGCCTCCACTGCACATACTTGGACAACGCTATCTGGAACAGGTGCTGATGATGTAAGAGTTATGACCAGAAAGAGTGTTGACGATCCAGGCAGACCTCCTGGCATTGTTCTTAGTGCTGCCACTTCTTTCTGGCTTCCTGTTCCTCCCAAAAGGGTTTTTGATTTCCTCCGGGATGAAAACTCAAGAAGTGAGTGGGACATTCTTTCAAACGGTGGAGTTGTTCAAGAAATGGCACATATAGCTAATGGCAGAGACACAGGAAATTGCGTGTCACTGCTAAGAGTAAATAGTGCGAATTCGAGCCAGAGCAACATGTTGATTTTGCAAGAGAGTTCCAATGACCCAACTGGATCATTTGTTATTTATGCTCCTGTTGATATAGCCGCCATGAATGTGGTCCTCAACGGCGGTGACCCTGATTACGTGGCTCTTCTTCCTTCGGGCTTCGCTATTCTCCCCGATGGAACAACCTCGCATGGAACTGGCATTGGCGAAGGTAGCAGTGGTGGATCTCTCCTGACTGTTGCTTTTCAAATTCTAGTTGATTCATTTCCAACAGCTAAGCTCTCTCTTGGATCCGTTGCTACTGTTAACAATCTCATTGCTTGCACGGTTGAGAGAATCAAGTCCTCTTTATCATGTGAACCTGCTTGA 2250 0.4742 MPSMIGRNGSFGGYGSSSTSGLTLGQPNLMEGQLQSLDMTQNTSESDIPRIRDDDFDSATKSGSENHEAASGDDQDPLPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERQENAQLRAENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPALSFPLLSSPIPPRPLELAGSPFGGQPSIGGDMYGAGDLLRSISAPTEADKPVIIELAVAAMEELIRMAQMGEPLWMTSIDGASSVLNEDEYIRSFPRGIGPKPTGFRCEASREIAVVIMNHINLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYFVRYCKQHAEGTWAVVDVSLDSLRPSPVVRCRRRASGCLIQEMPNGYSKVTWVEHLELDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLASAMASNIPTGDVGVITNQEGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESSNDPTGSFVIYAPVDIAAMNVVLNGGDPDYVALLPSGFAILPDGTTSHGTGIGEGSSGGSLLTVAFQILVDSFPTAKLSLGSVATVNNLIACTVERIKSSLSCEPA* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00557 749 Gene3D - 328 487 IPR023393 -
Pte17g00557 749 Coils Coil 132 164 - -
Pte17g00557 749 Pfam Homeodomain 81 136 IPR001356 GO:0003677
Pte17g00557 749 MobiDBLite consensus disorder prediction 47 81 - -
Pte17g00557 749 MobiDBLite consensus disorder prediction 10 46 - -
Pte17g00557 749 SUPERFAMILY Bet v1-like 509 741 - -
Pte17g00557 749 ProSiteProfiles START domain profile. 261 493 IPR002913 GO:0008289
Pte17g00557 749 SMART HOX_1 79 142 IPR001356 GO:0003677
Pte17g00557 749 Gene3D - 66 155 - -
Pte17g00557 749 FunFam Homeobox-leucine zipper protein HDG1 66 154 - -
Pte17g00557 749 ProSiteProfiles 'Homeobox' domain profile. 78 138 IPR001356 GO:0003677
Pte17g00557 749 Pfam START domain 271 490 IPR002913 GO:0008289
Pte17g00557 749 FunFam Homeobox-leucine zipper protein GLABRA 2 270 489 - -
Pte17g00557 749 SMART START_1 270 490 IPR002913 GO:0008289
Pte17g00557 749 SUPERFAMILY Bet v1-like 261 492 - -
Pte17g00557 749 CDD START_ArGLABRA2_like 265 489 - -
Pte17g00557 749 CDD homeodomain 81 139 IPR001356 GO:0003677
Pte17g00557 749 MobiDBLite consensus disorder prediction 1 89 - -
Pte17g00557 749 SUPERFAMILY Homeodomain-like 71 138 IPR009057 -
Pte17g00557 749 ProSitePatterns 'Homeobox' domain signature. 113 136 IPR017970 GO:0000981|GO:0006355
Pte17g00557 749 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 76 744 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00557 Pte-Chr17 7895656 7900987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00557 26 750 Homeobox Transcription Factor Family AT1G05230 78.338 0.0 1168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte17g00557 START 1.6e-60 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00557 K09338 - cave:132180993 1314.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00557 17 7895656 7900987 Pte17g00557 17 7895656 7900987 RCT