Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00552 ATGAAGATCATCATCGTTACAAGATCACGCCAGTTTTTCGTTGAGGTCGACAGCCAAGAACCTGTCTTGGACATTAAAAGGAAAATTGAGCAAATTCTAAATATCCCAGTGGCTTCACAAACTCTCAGTGTGTCAGGTTGGGAGCTTATGGATGGACTAGACATGGAAGACTACCCCATTATCACTGAAGGTACTAAAGTCGATCTCACATTTAAAACCATGGGACTCCCACCAAACAATTTCAACCAAATCCAAATCATAGTAAAATTCTCAGCTAGGCAGATTGTCATCGAAGTAGAAAGATCAGAGACCGTAGGTAGCCTAAAGGAAAAGATTCATATCATGGATGGCACACCTATAAAAAGAATGTCACTTTTCTACTCGGGAATAGAGCTAGAAGAAGAATACAGAAATTTAAGTGAGTATGGCATAGGAGAATTCTCAGAAATCATAGTGTTCCTCAAAAATATGAATCGTTTAAAGGATGAACCACCCCCACGGAAGTTAAGCATAACGGTGCAGGCTTCTTCTAGCTTGCTTAATGCAGCAACTATTCCAGTAGAGATGAGAGACACCTGTACAGTCAATGACTTGAGGAATTTACTCTTGAACAGAAAAGTACTTCCAGAAGAAGATTATATATTCATCCACAAGCAGAGAATCATGAGAGACAAATGTAGCCTCCGCTGGCATGGAGTTGAAAATGGGGATTCTCTCTATGTATTTAAAGGAACTGTTAGCCGTAGTTCATACTGA 756 0.3981 MKIIIVTRSRQFFVEVDSQEPVLDIKRKIEQILNIPVASQTLSVSGWELMDGLDMEDYPIITEGTKVDLTFKTMGLPPNNFNQIQIIVKFSARQIVIEVERSETVGSLKEKIHIMDGTPIKRMSLFYSGIELEEEYRNLSEYGIGEFSEIIVFLKNMNRLKDEPPPRKLSITVQASSSLLNAATIPVEMRDTCTVNDLRNLLLNRKVLPEEDYIFIHKQRIMRDKCSLRWHGVENGDSLYVFKGTVSRSSY* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00552 251 ProSiteProfiles Ubiquitin domain profile. 84 159 IPR000626 GO:0005515
Pte17g00552 251 Pfam Ubiquitin family 86 155 IPR000626 GO:0005515
Pte17g00552 251 Pfam Ubiquitin family 7 72 IPR000626 GO:0005515
Pte17g00552 251 SUPERFAMILY Ubiquitin-like 1 78 IPR029071 -
Pte17g00552 251 SUPERFAMILY Ubiquitin-like 76 164 IPR029071 -
Pte17g00552 251 ProSiteProfiles Ubiquitin domain profile. 1 60 IPR000626 GO:0005515
Pte17g00552 251 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 72 - -
Pte17g00552 251 Gene3D - 1 69 - -
Pte17g00552 251 Gene3D - 83 155 - -
Pte17g00552 251 CDD Ubl_ubiquitin_like 86 153 - -
Pte17g00552 251 ProSiteProfiles Ubiquitin domain profile. 169 241 IPR000626 GO:0005515
Pte17g00552 251 SMART ubq_7 1 72 IPR000626 GO:0005515
Pte17g00552 251 SMART ubq_7 169 244 IPR000626 GO:0005515
Pte17g00552 251 SMART ubq_7 84 155 IPR000626 GO:0005515
Pte17g00552 251 Gene3D - 156 248 - -
Pte17g00552 251 SUPERFAMILY Ubiquitin-like 179 246 IPR029071 -
Pte17g00552 251 CDD Ubl_ubiquitin_like 184 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00552 Pte-Chr17 7859996 7860751 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00552 84 155 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 34.247 6.13e-06 43.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00552 17 7859996 7860751 Pte17g00552 17 7859996 7860751 RCT