Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00548 ATGCCTGAGAGGAAGCAATTCAAGACCAAATTATGTCAGCTATATCAGAAAGGTCGCTGTGCTCGCCGTGGTTGCTCCTTTGCTCATGGAGATGCTGAGCTTCGACGATATACTACTGCCGGGAGGCGGGGTCATCAAGGTGCCGACTTAAGGAATAAACTGGACAGAAGGCTTTTATCACCTAGGAGGTATTCACCACCTAGAGACACTAGAGGTCGTTATTCCATTCAAGAAAAGAGCCCTTCTAGGTCTTTTGAGAAAAGAGGTGACCGGAAATTTAGGAAAACGGGATGCGTGAGTGGCCAAAGTGAAATTTCTGGAAGCAAAAAATTTTCTGATGGTAACCGTAATCGAGTTAAAGAAGAAAAGTTCCTGACTGTTGATCCTACAAATTCCATTCATGAGCAGATGAAGACGTTAGAGGGTGATATCAATGTTCTTGACAACAAAAAGTGCAGACTTGAGGCCCACCTAGAAGAAAAGGCTCGAGAGATTGATAGTCTTAACTCTAGGATTCAGGAGCTTGAGGCTCAATTGTATAAAGAGGATCAAGAATGTAAAAGGATTACCTCAAGAATAAGGAAGTTTGTCAAGGCACATAGAGAACACTCTTCGCTGCAGGATGAGTTGAAAAGATCTCAAACCCAACTTCAGAGGCTTGGTGATCAGCTTGCCTCAGAAATGACTAACTTTGGAGTCAATGAGGAGGAGTTAAGCATTGACGTTGTGAGCAATGGGGAGCATCCTGAGGTTCCTTTAAAAAGTAACAGAGAGCTGAATAGTGCCTCTCCATTCAGAAAAAGGCTGCTTGAGAGAGATGCTCCTGAAGCATCAAAAAAAGGAAAACGAAGAGATTCAGATGTTGCGGCTAGACCAAAGAAGCTTTCTGGATGGAATTGGCCTGTACCACAGAAAAATGATGTGGATTCCGATGGCCTTGATCCACACATCACAAGGCCCCGAGCATATGAAGGCAAGTCTAAGAAAGCAAAGTATGCTTCGGATGGCGTCTTCTTTGCAGACAAGTCAAAGGATTCGGATTCAAGGCCCTTAGTACCGCCTACCAGCATGGCAGCCCATGCAGCTGACAATGAAGTTGAGATTGAATTGAGTGACAAGATTGAACTTGTTGAAGCTGGTTCTATAGGAGATGAAAAGGATGCTACCCATTTGAAGCGCCTACCACCTCTGCCCCCTCCACTTCTAACTCTTACCAATAACTACTCACAGTGTGAAGGAAATGATGATCATGTGGATGTCGATGGACCTGATGTGGAAGAAGAGAACTGTAACGTGGATATTGTTTGA 1308 0.4419 MPERKQFKTKLCQLYQKGRCARRGCSFAHGDAELRRYTTAGRRGHQGADLRNKLDRRLLSPRRYSPPRDTRGRYSIQEKSPSRSFEKRGDRKFRKTGCVSGQSEISGSKKFSDGNRNRVKEEKFLTVDPTNSIHEQMKTLEGDINVLDNKKCRLEAHLEEKAREIDSLNSRIQELEAQLYKEDQECKRITSRIRKFVKAHREHSSLQDELKRSQTQLQRLGDQLASEMTNFGVNEEELSIDVVSNGEHPEVPLKSNRELNSASPFRKRLLERDAPEASKKGKRRDSDVAARPKKLSGWNWPVPQKNDVDSDGLDPHITRPRAYEGKSKKAKYASDGVFFADKSKDSDSRPLVPPTSMAAHAADNEVEIELSDKIELVEAGSIGDEKDATHLKRLPPLPPPLLTLTNNYSQCEGNDDHVDVDGPDVEEENCNVDIV* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00548 435 MobiDBLite consensus disorder prediction 246 325 - -
Pte17g00548 435 ProSiteProfiles Zinc finger C3H1-type profile. 6 32 IPR000571 GO:0046872
Pte17g00548 435 Gene3D - 130 240 - -
Pte17g00548 435 Gene3D - 1 36 - -
Pte17g00548 435 MobiDBLite consensus disorder prediction 309 325 - -
Pte17g00548 435 MobiDBLite consensus disorder prediction 60 93 - -
Pte17g00548 435 Coils Coil 158 192 - -
Pte17g00548 435 Coils Coil 203 223 - -
Pte17g00548 435 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 422 IPR045868 GO:0046872
Pte17g00548 435 MobiDBLite consensus disorder prediction 264 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00548 Pte-Chr17 7808584 7814376 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte17g00548 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00548 - - qsa:O6P43_028696 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00548 17 7808584 7814376 Pte17g00548 17 7808584 7814376 RCT