Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00540 ATGGAGCCATTATGTGAGTTTTGTGGGGTGGTAAAAGCGGTTGTGTATTGCAAATCGGATGAGGCTCGTCTCTGTTTGCAGTGCGATGGATGTGTACACTCTGCCAATTCTCTGTCACGCAAGCATCGGCGTTCGGTTTTATGTGACAAATGCAATGTTCAACCTTCGACGGTGAGGTGCATCGATGATAAGGTTTCTCTTTGTCAAGCTTGTGATTTGAATGGAAATGGGTGTTCAATCATGAGTCACCGACGTCAGCCACTAGAGTCTTACACGGGCTGTCCTACTTTGCCTGAGTTGTCAAGGATATGGTCCTGTGTTTTTTATGAGTCTTGGTCAACTGGTTTCGCTCATAACAGCGATAATCTATGGGGTTCACTTGGTACATTGCCAATGAATGAGAATTGCGTTGCTGATGGTTGTCTGAAACAACAAGACAATGATGCTTCGTTTGATTTGGTGGCAAGCGAAATGGATGACATTGAAGCATGTGTTAAAGCGGAATCATGGCTGGTACAACCTTCGACAATCCTACCAAATCCAAATCACAAGTCATACTGCAAAGATGAAGGTCTTCTCTTCAGTGGGAACACAAATCTAACAGCGGAGTCTAATTTCAAGGAATTGGTGATTCAGAGCGATGATATTTGTAAGGGCCTTAACATAGATGATGTGTCCTTGGACTTTGGCAACGAAGACGAAATATTTGGATATTCTCAAGGTCCTAACAAATACACATTTCAAGATGGAAGAATGGATTGCCTACTAATGGAAAAGAATGGTTCTGTCACAGAATCCAATGGCCCAGTTGAAAATGCCCTAGAGGCATCATCATCAGCACAAAACCGTGTGCCATTTCAGCCATGTAGGATTGGTGGGGGAACTAGCATATTGCAGCCAACGAATGGTAATGCTAATTGCATGCTTATGAATCCCAGCTGCCACGGAAGCATCAACCTAGGATTCCCTCCTGTACCAGCGGCTCCTGTTTCACTTACACTGTCCAACATCACTGGTGAAAGTAGTGCTGCTGATTATCAAGATTGTGGATTGTCACCAGTGTTTCTCACTGGAGAATCCCCATGGGAACCAAATTTGGATCCTACTTGCCCACAAGCCAGAGATAAAGCTAAAATGAGATACAATGAGAAAAAGAAGACTCGCACATTTGGGAAGCAAATTAGATATGCATCTCGCAAAGCAAGAGCTGATACTAGAAAACGTGTGAAAGGTAGATTTGTGAAAGCAGGTGAAACATATGATTATGATCCTCTTGGGACAAGGAATATCTGA 1293 0.4331 MEPLCEFCGVVKAVVYCKSDEARLCLQCDGCVHSANSLSRKHRRSVLCDKCNVQPSTVRCIDDKVSLCQACDLNGNGCSIMSHRRQPLESYTGCPTLPELSRIWSCVFYESWSTGFAHNSDNLWGSLGTLPMNENCVADGCLKQQDNDASFDLVASEMDDIEACVKAESWLVQPSTILPNPNHKSYCKDEGLLFSGNTNLTAESNFKELVIQSDDICKGLNIDDVSLDFGNEDEIFGYSQGPNKYTFQDGRMDCLLMEKNGSVTESNGPVENALEASSSAQNRVPFQPCRIGGGTSILQPTNGNANCMLMNPSCHGSINLGFPPVPAAPVSLTLSNITGESSAADYQDCGLSPVFLTGESPWEPNLDPTCPQARDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGETYDYDPLGTRNI* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00540 430 SMART bboxneu5 1 47 IPR000315 GO:0008270
Pte17g00540 430 ProSiteProfiles Zinc finger B-box type profile. 43 88 IPR000315 GO:0008270
Pte17g00540 430 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pte17g00540 430 ProSiteProfiles CCT domain profile. 374 416 IPR010402 GO:0005515
Pte17g00540 430 CDD Bbox1_BBX-like 4 47 - -
Pte17g00540 430 Pfam CCT motif 374 416 IPR010402 GO:0005515
Pte17g00540 430 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00540 Pte-Chr17 7693141 7695970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00540 1 424 C2C2-CO-like Transcription Factor Family AT3G21880 40.185 1.93e-92 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pte17g00540 CCT 1.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00540 - - qsa:O6P43_028700 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00540 17 7693141 7695970 Pte17g00540 17 7693141 7695970 RCT