Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00516 ATGGGAAGAACACCTTGCTGTGACAAAAGTGGTCTCAAGAGAGGTCCTTGGACGTCAGAGGAAGATCAAAAGCTCATAAACTACATCCAAAACCATGGACCACGTAATTGGCGTAATCTTCCAAAGAATGCAGGGCTTGAAAGATGTGGCAAGAGTTGCCGCCTTCGATGGGCAAATTACCTGAGGCCTGATATAAAAAGAGGCAGATTCTCGTTCGAAGAAGAAGAAACCATCATTCAATTACACAGCATCATGGGAAACAAATGGTCGGCTATAGCAGCTCGCCTGCCAGGGAGGACTGATAATGAAATAAAAAATTACTGGAACACACACATCAGGAAAAGAATGCTTAAGATGGGACTTGATCCAGTTACTCATGCTCCACGTCTGGATCTTCTTGAGTTATCCTCCATTCTCAGCTCGGCTTTGTGCAACCCATCACTGCTCAACTTGTCAAACTTAATAGGGACCCAAGCGGTCTTAAATCCAGAGTTGTTGAAGTTGTTGAACAATTTCACGTCGTTGAAAACTGAGAACTCGGAATTGTTCTCAGAAAATTTCCAGCAGATGCAACTTGGAAATATTTCTCAGTTGCAAAGCCAATTCCTAACATTACAAAACAACAACAACCAGTTTCAGATGCCAACTGCGGCGCCCAACATGGAAGGCCTCTTGTCCAACATGTCAAACTTTAGCTCTCAACTGAGCTCCTTACAGGCGAATTCATTGCCTTCATATATACCTGAGAATTTTGTTGCACAACAAAACTATGCTGGTCTACAAGGAAACCCTAGTTTCCAAGCTCAAAATAATTGTGGCAACCACTATCAAAGCTACGATTCAGTTCTCTCCACACCTATATCAAGCCCAACGCCATTGAATTCATCATCAACACATGTAAACAGCGCGACGGAGGATGAGAGAGATAGCTACTGCAGCAACCTCTTCAAGTTTGAAATTCCAGATCAGAGTTTGGACATTAGTGACTTCTTGTAA 996 0.4287 MGRTPCCDKSGLKRGPWTSEEDQKLINYIQNHGPRNWRNLPKNAGLERCGKSCRLRWANYLRPDIKRGRFSFEEEETIIQLHSIMGNKWSAIAARLPGRTDNEIKNYWNTHIRKRMLKMGLDPVTHAPRLDLLELSSILSSALCNPSLLNLSNLIGTQAVLNPELLKLLNNFTSLKTENSELFSENFQQMQLGNISQLQSQFLTLQNNNNQFQMPTAAPNMEGLLSNMSNFSSQLSSLQANSLPSYIPENFVAQQNYAGLQGNPSFQAQNNCGNHYQSYDSVLSTPISSPTPLNSSSTHVNSATEDERDSYCSNLFKFEIPDQSLDISDFL* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00516 331 SMART sant 13 63 IPR001005 -
Pte17g00516 331 SMART sant 66 114 IPR001005 -
Pte17g00516 331 CDD SANT 69 112 IPR001005 -
Pte17g00516 331 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte17g00516 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte17g00516 331 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte17g00516 331 CDD SANT 16 61 IPR001005 -
Pte17g00516 331 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte17g00516 331 FunFam MYB-related transcription factor 13 66 - -
Pte17g00516 331 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pte17g00516 331 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte17g00516 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte17g00516 331 Gene3D - 69 116 - -
Pte17g00516 331 Gene3D - 14 66 - -
Pte17g00516 331 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 249 - -
Pte17g00516 331 FunFam Transcription factor MYB39 69 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00516 Pte-Chr17 7109138 7110593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00516 1 331 MYB Transcription Factor Family AT4G21440 49.041 4.27e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte17g00516 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00516 K09422 - qsu:112033181 412.92