Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00497 ATGGCGAATCGTTGGTGGGCTGAAAATGTGGCAGTTAAAGGTGCAGAACCCATGTCATCTTCTCCATGTCTTAACCTGAGAAGCCGTGGGGAAGATGACCATGGAGGATTGGACAGATTCGGAACTAGAAGAGAGAAAGACTTCATGGAAAGTATAAATCCCCAAAACACCAACAACACTCCATCCAAGACTACCACCTGTGGTAACACTAACCAAAACCCCAACACTGGCTCGCAGAGCCTAAACGACGATGATGGCCGAGACAACGAACATGAAGCTCATGAACAAAACCCAGGTAGCCAAGAAGCTGTGGAGCCAGCTGGAAGCAATGGCGGTCGGCGTCCTCGAGGTCGGCCACCGGGCTCCAAGAACAAACCAAAACCAGCGATAGTGATAACTAAGGAAAGCCCCAATGCACTCAGAAGCAATGTTTTGGAAATCAGCAGCGGGAGTGATATAGTTGAGAGTATTGCTAACTTTGCAAACCGGAGACATAGAGGTGTGTCTGTGCTTAGTGGTAGTGGCATTGTTACAAATGTTACACTTAGGCAACCAGCTGCACCAGGTGGGGTGGTTACTCTTCATGGACGGTTCGAGATATTATCTCTATCCGGTGCATTTCTGCCGGCGCCATCACCGCCTGGAGCGACGGGGCTAGCTGTTTATTTGGCCGGTGGGCAGGGGCAGATTGTTGGTGGCACTGTAGTTGGTGCACTGGTGGCCTCAGGACCTGTAATGGTGATTGCAGCTACTTGCACAAATGCAACTTATGAAAGGTTGCCGCTAAAGAATGAGGCTGGGGAGGAAATGCAAGAGCAGCAGCAACAATCAACAGTAAATTCAGGAACCGCTACTCCTGCGAATAATACGACATCTCAAGGTTTGGTTGACCAGGTTTCGATGCCTCTGTATAATTTGCCTCCAAATTTATTACCAAATGGTCAGATGCAGCACGATGTGTTTTGGGGTACACCCCGCCCTCCTCCTCCGTCTTACTGA 999 0.4955 MANRWWAENVAVKGAEPMSSSPCLNLRSRGEDDHGGLDRFGTRREKDFMESINPQNTNNTPSKTTTCGNTNQNPNTGSQSLNDDDGRDNEHEAHEQNPGSQEAVEPAGSNGGRRPRGRPPGSKNKPKPAIVITKESPNALRSNVLEISSGSDIVESIANFANRRHRGVSVLSGSGIVTNVTLRQPAAPGGVVTLHGRFEILSLSGAFLPAPSPPGATGLAVYLAGGQGQIVGGTVVGALVASGPVMVIAATCTNATYERLPLKNEAGEEMQEQQQQSTVNSGTATPANNTTSQGLVDQVSMPLYNLPPNLLPNGQMQHDVFWGTPRPPPPSY* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00497 332 ProSiteProfiles PPC domain profile profile. 137 274 IPR005175 -
Pte17g00497 332 MobiDBLite consensus disorder prediction 83 98 - -
Pte17g00497 332 MobiDBLite consensus disorder prediction 268 293 - -
Pte17g00497 332 Pfam Plants and Prokaryotes Conserved (PCC) domain 143 253 IPR005175 -
Pte17g00497 332 Gene3D - 141 278 - -
Pte17g00497 332 CDD DUF296 144 252 IPR005175 -
Pte17g00497 332 MobiDBLite consensus disorder prediction 51 82 - -
Pte17g00497 332 SUPERFAMILY AF0104/ALDC/Ptd012-like 138 264 - -
Pte17g00497 332 MobiDBLite consensus disorder prediction 15 130 - -
Pte17g00497 332 MobiDBLite consensus disorder prediction 27 50 - -
Pte17g00497 332 MobiDBLite consensus disorder prediction 267 293 - -
Pte17g00497 332 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 73 324 IPR014476 GO:0003680
Pte17g00497 332 FunFam AT-hook motif nuclear-localized protein 140 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00497 Pte-Chr17 6684417 6685415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00497 1 333 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 49.573 5.31e-74 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00497 - - qsa:O6P43_020634 426.017