Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00491 ATGGCCTTGGAGCAGTACTTTGAGGAAACTGTGTCCCAGATTGACTCTTTTACAGAGGCTAAATCCACTTTGGGAAAATGGAATACCATCTCGGGAACTGATGTAAATGAATCTGCAGGCTTTGATTGCAATATCTGCCTGGATTCTGTGCAAGACCCTGTGGTCACCTTTTGTGGTCATCTCTATTGCTGGCCATGCATCTATAAGTGGCTTGATCATGTTGATAATAGACCCAGCGAAGATGAAGAACAGCAATCACCTCAGTGTCCTGTATGTAAAGCGGAGATTTCTCAGGCCTCTCTCGTGCCACTCTATGGACGAGGTGAAACAACAAATCCTTCGAAAGCCAAGGGCCACCAGATCCCTCGAAGACCTCAAGGGCCTGCATTGGGATTTAACACACAAATATCAATTGGCCACAGTTCACTTCATCCACCGGCTTCACAATTCAATGGCCATCACCATGGTGAACAATTCAACTCAGTTCCAAGCAGTTATAGTCCTCGGTCCGGTGTCTCCATAACAAATGTATTTAATCCAACGATTGGAGTATTTGGGGAGATGATATATGCAAGGGTGTTTGGTAATGCAGTGACGAACGTCTACACTTATCCAAATACATACAATCTTTCAGGAATCAGCAACCCTAGAATTAGAAGGCATGTGTTGCAGGCTGATGTATCACTCAACAGAATCTGTTTTTTTCTACTCTGTTGTATAGTGTCGTGTCTTCTTCTATTCTGA 744 0.4382 MALEQYFEETVSQIDSFTEAKSTLGKWNTISGTDVNESAGFDCNICLDSVQDPVVTFCGHLYCWPCIYKWLDHVDNRPSEDEEQQSPQCPVCKAEISQASLVPLYGRGETTNPSKAKGHQIPRRPQGPALGFNTQISIGHSSLHPPASQFNGHHHGEQFNSVPSSYSPRSGVSITNVFNPTIGVFGEMIYARVFGNAVTNVYTYPNTYNLSGISNPRIRRHVLQADVSLNRICFFLLCCIVSCLLLF* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00491 247 SMART ring_2 43 92 IPR001841 -
Pte17g00491 247 Pfam Zinc finger, C3HC4 type (RING finger) 43 75 - -
Pte17g00491 247 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Pte17g00491 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 106 IPR013083 -
Pte17g00491 247 ProSiteProfiles Zinc finger RING-type profile. 43 93 IPR001841 -
Pte17g00491 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 5 245 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pte17g00491 247 SUPERFAMILY RING/U-box 23 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00491 Pte-Chr17 6614675 6617433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00491 33 248 C3H Transcription Factor Family AT4G28270 37.273 7.47e-46 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00491 K10666 - gmx:100785491 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00491 17 6614675 6617433 Pte17g00491 17 6614675 6617433 RCT