LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte17g00487	ATGGGTTGCATATGTTCTAAGGTCTCAGCTGTTGCGGATGGCCGGGAAGATTTACCAAATAAATCGCCATCAGAGAATTCTGCTAGAAACGATGGGAAAGTTTTGGTAAAAGACAAGGTGGATAGAAATCATTTCAGAGTGTCTATGATTGGCATCAAAGATCATGGCGTGATAAAGTTGTATCATGATAAGAAGAAAGAAGAGGGTCCTGAGGTAACACGTCTTAAATTAAATCATCCCAGCTTTGGAAGGGTCCCAAAGGCTGCATTTGGAGAGCAGGTTGCCGCTGGATGGCATGATTGGCTTTCTGCAGTTGCAAGTGAAGCTATCTCTGGATGGGTGCCACGGTGCGCTAATACATTTGAGAAGTTAGATAAAATTGGCCAAGGAACCTATAGTAGTGTTTATAGGGCTCGTGACATGACATACCAAAAAGTCGTTGCTTTGAAGAAAGTACGGTTTGATAATCTTGATCGTGAGAGTGTGAAATTTATGGCAAGGGAAATCCTTGTTCTACGTAGGCTACAACATCCAAACGTTATAAAGTTGGAAGGATTGATAACTTCAAAAATGTCTCGTAGCTTGTACCTTGTCTTTGAGTACATGGAACATGATCTTACAGGACTGGCATCAAGGCCTGGCATTGAGTTTTCTGAGTCGCAGGTTAAATGCTACATGAAGCAACTTCTTAGTGGGCTTGATTATTGCCATACTCAAGGAGTCCTGCACCGTGACATAAAGGGCTCCAATCTCCTTATTGATAATAGTGGGATCTTAAAGATTGCAGACTTTGGTTTGGCAAGTTTTTTTGATCCTGACCACTGTGTGCCATTGACAAATCGTGTGGTTACTCTCGGGTACAGACCACCCGAACTGTTACTGGGAGCCTCTCACTACAGAGTTGCGGTGGATTTGTGGAGTGCTGGTTGCATACTTGGAGAACTGTACACTGGAAAGCCTATATTGGCAGGAAAAACAGAGGTTGAACAATTACATAAGATATTCAAGCTGTGTGGGTCGCCTTCTGAAGATTATTGGGGAAAATTGGGTTTACTAAATGCAGCACTATTCAAGCCGCCACATTCTTATAGATGCTATCTTGCTGACATGTTCAAGCACATTCCAGCTGCTTCTGTAAAGCTAATCAAGACCTTACTCTCCCTAGACCCTGCATGTCGAGGAACAGCAGCTACTGCACTCGAAAGCGAGTTCTTCACAACGGAACCTCTTGCTTGTGATCCTTCAAGTTTACCAGCATATCCTCCCAGCAAAGAGATTGACACCAAAGTGTTGGTTGAAGTTTGCAGAAGGCAAGGAGCCAGTGGCCTAAGGGAGCAAAAATTTGGCTTGGGAATTCAACCAGAGAAAGAGCTTCCAGCAATTCCTGTCGCGAAAGCTAATGCAAAGCAACTCTCATCGATGCAGACGCAGAGAGCTCATGTTCATTCAAGTTCAAAGACCCGAAGTCAATTGATCAATGTGCACAGGAATGAATCTCTTTCTGGTTTTCTGGTTGGTCCACATAAACAGTCAGTTGATGTAAACAAAATCAAGAGAGAACGCCAGGATTATGTTTATATGAAGCCTTCATATTCAGGACCATTAGTGCATGGTACTGAATGGGCAAAGGCTGGTAAGGAAGTTGATGCCCTGTCCATGTATCCTAACAAAGTGAAATTATCACACCTATCAGGTTTCATAGAAACTAAGGCGCAATGGGCGGAGATAAGGCAGAAAAACGAGGTACTGCACAGACAGAAAACACACTTCCAAATGGAAGATGTATGGGATTTAACGATGGATCACAATACTCAGAGGTTTGCAGAATTCCACCATAATGAAGATGGAGGATACAACACCAAAGATGCAACACGGGAAATGCGTGGGTCCAAGGGAAACAAGATTTATGTTTCTGGTCCATTACTGGTTTCATCAAACAATGTGGATCAGATGCTTAAAGATCATGACCAAAGAATACAGGAATTTTCACGACGAATGCGACTTGACAAGACAACAGCCGATAGAGTTTACAAGCAGCGTAAGTAG	2046	0.4301	MGCICSKVSAVADGREDLPNKSPSENSARNDGKVLVKDKVDRNHFRVSMIGIKDHGVIKLYHDKKKEEGPEVTRLKLNHPSFGRVPKAAFGEQVAAGWHDWLSAVASEAISGWVPRCANTFEKLDKIGQGTYSSVYRARDMTYQKVVALKKVRFDNLDRESVKFMAREILVLRRLQHPNVIKLEGLITSKMSRSLYLVFEYMEHDLTGLASRPGIEFSESQVKCYMKQLLSGLDYCHTQGVLHRDIKGSNLLIDNSGILKIADFGLASFFDPDHCVPLTNRVVTLGYRPPELLLGASHYRVAVDLWSAGCILGELYTGKPILAGKTEVEQLHKIFKLCGSPSEDYWGKLGLLNAALFKPPHSYRCYLADMFKHIPAASVKLIKTLLSLDPACRGTAATALESEFFTTEPLACDPSSLPAYPPSKEIDTKVLVEVCRRQGASGLREQKFGLGIQPEKELPAIPVAKANAKQLSSMQTQRAHVHSSSKTRSQLINVHRNESLSGFLVGPHKQSVDVNKIKRERQDYVYMKPSYSGPLVHGTEWAKAGKEVDALSMYPNKVKLSHLSGFIETKAQWAEIRQKNEVLHRQKTHFQMEDVWDLTMDHNTQRFAEFHHNEDGGYNTKDATREMRGSKGNKIYVSGPLLVSSNNVDQMLKDHDQRIQEFSRRMRLDKTTADRVYKQRK*	682

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pte17g00487	681	PANTHER	CELL DIVISION PROTEIN KINASE	119	410	-	-
Pte17g00487	681	CDD	STKc_CDK9_like	121	405	-	-
Pte17g00487	681	ProSiteProfiles	Protein kinase domain profile.	121	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pte17g00487	681	FunFam	probable serine/threonine-protein kinase At1g54610	108	203	-	-
Pte17g00487	681	Gene3D	Transferase(Phosphotransferase) domain 1	209	439	-	-
Pte17g00487	681	SMART	serkin_6	121	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pte17g00487	681	Pfam	Protein kinase domain	121	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pte17g00487	681	Gene3D	Phosphorylase Kinase; domain 1	115	208	-	-
Pte17g00487	681	ProSitePatterns	Protein kinases ATP-binding region signature.	127	150	IPR017441	GO:0005524
Pte17g00487	681	FunFam	probable serine/threonine-protein kinase At1g54610	204	445	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte17g00487	Pte-Chr17	6540706	6547725	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte17g00487	113	448	Core Cell Cycle Gene Families	AT5G10270	50.565	2.58e-111	343

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Pte17g00487		Pkinase	1.1e-64	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte17g00487	-		-	qsa:O6P43_000733	792.341

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