Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00473 ATGATACCCTTTTGCAAAAGTTCCTTCCTTGCAACAGCGGCCTTGATTCTGACGACGATTCTGATCATCCTTACTTCTGACCATTTCCGCATGTATGAATTCAAGATACGGAGGTGCACTCGTAGCCGCAACCATGACTGGACCGACTGTCCATTTGCTCATCAAGGAGAGAAGGACCGACTGTCCACTTTCTACCGTTACTCTGGTACGGTCTGCCCTGAATATCGACGTGGTGGATGTAGCCGTGGGGATAGGTGTGAGTTCGCTCATGGCGTGTTTGAGACATGGCTTCATCCATCGAGGTACAGAACTGAAGCTTGCAAAGATGGGAAGAACTGTAAACGAAAGGTATTTTTTTTCGCTCACACCCCTCATCAACTCAGGATTCTCGACGAGAATTGTCACGATCCTTTATCTAAAATGGCATGCAAGAAGAACGAGCTCATTTGTTGCTTTTTTTGTCACCGCGGCGGCAGCGGAGGAGCTGATACTGCTGCCTCTCCCACTTCAACATTGTTAGGTATGTCTCATCTGTCTCCTCCACTGTCACCTTCGCAATCAATCACGCAGCCTCTTTCACCCATGGAAGGAAGGAACCGAACTGGGATTTCTCCGATTTCTCGATATAGTGAGAGATTTGTAAGATCTGACTCATCGAGCTTAATGAGTCCTCGTCAAAGAATTAACAGTCATGAAGATGTGTTAACCGAGCTAATGAGCTCTACGGTTGCTATGAAACTCAGTGAAGCTTTGCCTGTTTCAGATGTGCCTACTAACAATTCACCAAGCCTGCCTTGGGTTGATGTTTCATTTAATGCCGATGATCAACAGCAGTTCATTTTTTCACCTAGTACACCACCATCAGCTTCTAGGTCTGCAAATTCCTTCAATAGAAAAATTTCAACTCCAAATTTCTTGACAACAAGATCAAATCTTTGGGCTTGTCCAACCCCAGATATTGAGTGGGTGCATAACTTACTCATCTAA 987 0.4519 MIPFCKSSFLATAALILTTILIILTSDHFRMYEFKIRRCTRSRNHDWTDCPFAHQGEKDRLSTFYRYSGTVCPEYRRGGCSRGDRCEFAHGVFETWLHPSRYRTEACKDGKNCKRKVFFFAHTPHQLRILDENCHDPLSKMACKKNELICCFFCHRGGSGGADTAASPTSTLLGMSHLSPPLSPSQSITQPLSPMEGRNRTGISPISRYSERFVRSDSSSLMSPRQRINSHEDVLTELMSSTVAMKLSEALPVSDVPTNNSPSLPWVDVSFNADDQQQFIFSPSTPPSASRSANSFNRKISTPNFLTTRSNLWACPTPDIEWVHNLLI* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00473 328 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 71 91 IPR000571 GO:0046872
Pte17g00473 328 SUPERFAMILY CCCH zinc finger 64 95 IPR036855 GO:0046872
Pte17g00473 328 ProSiteProfiles Zinc finger C3H1-type profile. 66 93 IPR000571 GO:0046872
Pte17g00473 328 SMART c3hfinal6 101 124 IPR000571 GO:0046872
Pte17g00473 328 SMART c3hfinal6 66 92 IPR000571 GO:0046872
Pte17g00473 328 MobiDBLite consensus disorder prediction 179 203 - -
Pte17g00473 328 MobiDBLite consensus disorder prediction 179 197 - -
Pte17g00473 328 PANTHER UNKEMPT FAMILY MEMBER 25 327 IPR045234 -
Pte17g00473 328 Gene3D - 64 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00473 Pte-Chr17 6376511 6377763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00473 23 128 C2H2 Transcription Factor Family AT5G07500 62.037 2.20e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte17g00473 zf-CCCH 5.2e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00473 K23047 - qsa:O6P43_028831 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00473 17 6376511 6377763 Pte17g00473 17 6376511 6377763 RCT