Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00472 ATGGCTATCAACAATAATAAGCTTGGGGTGAAGAAAGAAAACAATAACAACGGCAAAGAGATTCATTATAGAGGAGTGAGGAAGAGGCCATGGGGTCGATATGCAGCCGAGATCCGAGATCCAGGAAAGAAGAGTCGGGTATGGTTGGGTACCTTTGATACCGCCGAGGAAGCTGCGAGAGCATACGACGCCGCTGCTAGGCAGTTTCGCGGTACCAAAGCTAAGACTAACTTCCCTTCATCCGATGACAACGTCAATCGTAATAATCTGAGTCCCAGTAGTGACAGCCATAGCACCGTCGAGTCATCGAGCCGTGATGGGAAGGAGCGTCAAACCACGCGCCGTCATGATGTGGGTTTGGAGCAGGCGGCTTTAGCGGCACCGACTGCTGTGGTCGATCGTTTCCCATTCCTTCAGATGCAGCCGTCTAACATGGGGCATCGTGGGAGTGACATCGATGGCGCTTTTGACAGCTACGTGGCGGCTCGTCCGGTTTTCTTTCTTGATCCGGTTTGCAGAACAGAGGCGTTGAGCCAGCGTTGTTATCCTGTCCGGTTTGACCCGGTTCCACAAGTCGAGTTTAGAACCGGTTTTGTCGGTGGGGTCCAGAGCGATTCAGATTCATCTTCAGTCGTTGATTGTCATCCGCCAAAGAAAGAAATTAATCTGGATCTCAACCTTGCCCCACCCATGGTGGATGCCTAA 705 0.5163 MAINNNKLGVKKENNNNGKEIHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARQFRGTKAKTNFPSSDDNVNRNNLSPSSDSHSTVESSSRDGKERQTTRRHDVGLEQAALAAPTAVVDRFPFLQMQPSNMGHRGSDIDGAFDSYVAARPVFFLDPVCRTEALSQRCYPVRFDPVPQVEFRTGFVGGVQSDSDSSSVVDCHPPKKEINLDLNLAPPMVDA* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00472 234 MobiDBLite consensus disorder prediction 101 117 - -
Pte17g00472 234 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Pte17g00472 234 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Pte17g00472 234 FunFam Ethylene-responsive transcription factor 2 22 80 - -
Pte17g00472 234 MobiDBLite consensus disorder prediction 73 118 - -
Pte17g00472 234 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Pte17g00472 234 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Pte17g00472 234 MobiDBLite consensus disorder prediction 1 24 - -
Pte17g00472 234 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Pte17g00472 234 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Pte17g00472 234 CDD AP2 22 81 IPR001471 GO:0003700|GO:0006355
Pte17g00472 234 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Pte17g00472 234 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 139 - -
Pte17g00472 234 MobiDBLite consensus disorder prediction 73 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00472 Pte-Chr17 6361256 6361960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00472 19 235 AP2-EREBP Transcription Factor Family AT5G44210 45.701 6.22e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte17g00472 AP2 2.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00472 K09286 - qsa:O6P43_000758 208.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00472 17 6361256 6361960 Pte2g00838 2 7471692 7473440 RCT
Pte17g00472 17 6361256 6361960 Pte17g00472 17 6361256 6361960 RCT