Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00465 ATGGTAGAAGAAGAAAGTTCAACTGGTTTTCCTCATCAAAATCCCGTGGGAGTTTCCAATCCACTACCTGTTAAGAAGAAAAGAAACCTCCCCGGAAATCCAGATCCTGAAGCTGAAGTCATAGCCTTGTCTCCCAAGACCCTCATGGCAACCAACAGATTCTTGTGTGAAATCTGTGGGAAGGGCTTCCAGAGGGATCAGAATCTTCAGCTTCATCGCCGTGGACACAATCTCCCATGGAAGCTCAAGCAAAGGACTAGCAACGAAATAAAAAAACGTGTGTATGTTTGCCCTGAGAAGACTTGTGTTCACCACCATCCTTCGAGGGCACTTGGAGATCTAACCGGTATCAAAAAGCACTTCTGTAGAAAACATGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCAAAGCGCTATGCTGTGCAGTCCGATTGGAAAGCACACTCAAAGACTTGCGGCACCAGAGAATACAAATGCGATTGTGGGACAATATTTTCACGGAGAGATAGCTTTATCACTCACAGGGCCTTCTGTGATGCCTTAGCTGAAGAAACAGCAAGACTAAATGCTGCATCCAACATGAACAACACATTAGCTGCCAATTTGAATTACAGTATTATGGGAACATCCCTAGGGCCTAGCATGGGATCAAATTTTCCATCAATCTTCAAGCCAGTTTTGAACAATAATGAAACTAGTAATCAATCTGAAGGACTTTCTTTGTGGATGGGTCAAGGATCTCATCAAGTTCACGATTCAATAATAAGCAATCGCCATGTACAGGATATTCATCATCAGTTAGGACCAGCATCAGTCACTACTGGAGCAATGTATGGCAATCCACTTGTTTCATGCTCCAATCCTCCATCATCTGATTATCAACACAATTGGACCTTCGGAAATAAGCTTTCCTCAGGTCAAGCTGAAGAGCTGACAAACTCTTCACTTCCACTGAATCATAATATTGTGAAAGATGCAGCTGGGAATCAACTAATCAGTGTTCCTTCATTTTATAGCTCTCAACACCCATCTCATCAAACACCTTCACCAAGCATGTCAGCCACTGCTTTGTTACAGAAAGCTGCTCAAATTGGCTCGACTTCATCTGATCCATCATTCTTGGGAAGCTTTGCTTTGAAATGCAGTAATAGTCAAGTTCCAGATGGGAACAAGTTCTGTGGAATATATGGCTCAAACTCAGTGCTCACTAGCCTTGGAAGTGACCTAGAAAACTCAGCTTGTGATTTGTCACAAATGCACCCAGAGAAACGCCGCCGCATTCAGATTGAGGAGAGTGTTGGAGGGCAGACCAGGGATTTTCTTGGTGTTGGCGCGCAAAGCCTTTGTCACCCTTCATCAATCAACGGATGGATATGA 1377 0.4372 MVEEESSTGFPHQNPVGVSNPLPVKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSNEIKKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARLNAASNMNNTLAANLNYSIMGTSLGPSMGSNFPSIFKPVLNNNETSNQSEGLSLWMGQGSHQVHDSIISNRHVQDIHHQLGPASVTTGAMYGNPLVSCSNPPSSDYQHNWTFGNKLSSGQAEELTNSSLPLNHNIVKDAAGNQLISVPSFYSSQHPSHQTPSPSMSATALLQKAAQIGSTSSDPSFLGSFALKCSNSQVPDGNKFCGIYGSNSVLTSLGSDLENSACDLSQMHPEKRRRIQIEESVGGQTRDFLGVGAQSLCHPSSINGWI* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00465 458 MobiDBLite consensus disorder prediction 1 37 - -
Pte17g00465 458 FunFam protein indeterminate-domain 12-like 33 101 - -
Pte17g00465 458 SUPERFAMILY beta-beta-alpha zinc fingers 53 150 IPR036236 -
Pte17g00465 458 FunFam protein indeterminate-domain 5, chloroplastic-like 108 187 - -
Pte17g00465 458 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 15 446 IPR031140 -
Pte17g00465 458 SMART c2h2final6 130 150 IPR013087 -
Pte17g00465 458 SMART c2h2final6 54 76 IPR013087 -
Pte17g00465 458 Gene3D Classic Zinc Finger 50 77 - -
Pte17g00465 458 Gene3D Classic Zinc Finger 87 178 - -
Pte17g00465 458 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Pte17g00465 458 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00465 Pte-Chr17 6067490 6070063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00465 20 459 IDZ Gene Family AT1G03840 53.507 6.76e-155 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte17g00465 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00465 K25870 - tcc:18608782 681.019