Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00462 ATGGAGGGTGATTCCCATGGAGTGAAGAAAACCCCTGATAGAGGAGAGTTGAAGCTTAAAAGGAAAATGAAAACTCCTTCTCAGTTAGAAACTCTGGAAAAAACCTATACAGTGGATACCCACCCATCTGAGGCAGTAAGAGATGAGCTATCCGTTAAGCTAGGGCTGACAGATCGTCAGCTGCAGATGTGGTTCTGTAACCGAAGGATAAAGGACAAGAAGATGCCATTAGTGAAGAAGCTGCATAATGGGTCTCCAGGTGGTGCTGCCACTTCAACTCCATTGAGAGAGGTTGGCGAGGAAATGCTAGTGGCTAATGTGGGGAATGAGCATGTCATTGGTACGGTTTCTGGATCAAGTATTTTTGGCAACTCAAATTCATGGCAGAAGTGTCTACGTCCTGGAAGGAGAGTTGACTTGTCAGCAGTGAAGAGGCAATTTGAGCCTCAACAGGCAATAGCTGAGCGGCGAGCTATTGCATTAGTGGAAACAATCTTGGGAAAACCAGTAGAGGACGATGGCCCCATTCTTGGGATTGAGTTTGATTCAGTACCACCGGGCGCATTTGGTACACCTATAGTGGAAGCAACAATGGAGCAGGAACAGCAGAGGCCATCTGGATGGCCTGTCAAGGCAAATATGTGTGAGCGATCTAATGGCAATTTGAACAAGTGTGTCTCAAGAAGTCCCCATGAGTACCACTTTCTTCCTGCACAGCTCAATGCAAGAACTGAGACTTGTGGGAGAGTTGTCCCAACTTACCATCATGGTTCTCCTGACAACATTACGAATGACAGGACGTCGTCCGATAGGACTTCATCTGACAGGACTTCGTACGACGTGTCTTCATCCAACGAAACTGCAGTTTCACATCATGCACTTCAGATGCAGTGGCAGATGCCTGAGCTAATTACACTGTCCCAGCAAGGGAGGCATGATCCACTTTTATCTTCAGCTCCAGCATATCATGACAATTTCCTGCAACAGAACTCTGCATATAGCATTCCTATCCAACCCCATTACAGACAACGCTCATCATATAAATCAAACAATCAAAACATAATTTCTGAGCGGATGGTCATACATGAAGTTGAACTTGCTCGGATTGAAAGGAAGCACACGTGTGAGGAGATTAGAATAGAGCGGATGAATGTAATAGATGAATTCCAAAAAAATTTGGAAGCCCAAGAGAAGCGATTTAGGAAAGGAATTGAGAAACAAGAGATACTTATGCGAAAGAGAGAAGAGCAAATAAGAAAGGAATTGGAAATAATTAACCATGAAAAGCAGCAGGAAGAGATACTGTTGCGTGAAAGACAACATGAGGAAATATGCCAGAGGGTACAAAAGCCTGAATTAGAGAGGAGAGACAAACTCTCGCAGAAGGAGACTCTTATAGTAAGTGCGATGTCAACGTATGGTGGCATTTATTGGATTTGTTTAACATGGAAATGGAACAATTGTTTAATTGATTATTACAGGCTGAAAAAATGA 1494 0.4364 MEGDSHGVKKTPDRGELKLKRKMKTPSQLETLEKTYTVDTHPSEAVRDELSVKLGLTDRQLQMWFCNRRIKDKKMPLVKKLHNGSPGGAATSTPLREVGEEMLVANVGNEHVIGTVSGSSIFGNSNSWQKCLRPGRRVDLSAVKRQFEPQQAIAERRAIALVETILGKPVEDDGPILGIEFDSVPPGAFGTPIVEATMEQEQQRPSGWPVKANMCERSNGNLNKCVSRSPHEYHFLPAQLNARTETCGRVVPTYHHGSPDNITNDRTSSDRTSSDRTSYDVSSSNETAVSHHALQMQWQMPELITLSQQGRHDPLLSSAPAYHDNFLQQNSAYSIPIQPHYRQRSSYKSNNQNIISERMVIHEVELARIERKHTCEEIRIERMNVIDEFQKNLEAQEKRFRKGIEKQEILMRKREEQIRKELEIINHEKQQEEILLRERQHEEICQRVQKPELERRDKLSQKETLIVSAMSTYGGIYWICLTWKWNNCLIDYYRLKK* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00462 497 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677
Pte17g00462 497 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 6 465 IPR044977 GO:0006357
Pte17g00462 497 MobiDBLite consensus disorder prediction 1 20 - -
Pte17g00462 497 SUPERFAMILY Homeodomain-like 13 75 IPR009057 -
Pte17g00462 497 Gene3D - 10 86 - -
Pte17g00462 497 MobiDBLite consensus disorder prediction 251 283 - -
Pte17g00462 497 MobiDBLite consensus disorder prediction 257 283 - -
Pte17g00462 497 Pfam Homeodomain 20 74 IPR001356 GO:0003677
Pte17g00462 497 SMART HOX_1 17 79 IPR001356 GO:0003677
Pte17g00462 497 CDD homeodomain 20 75 IPR001356 GO:0003677
Pte17g00462 497 Coils Coil 386 406 - -
Pte17g00462 497 Coils Coil 412 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00462 Pte-Chr17 6000777 6004083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00462 1 470 Homeobox Transcription Factor Family AT5G44180 35.010 7.56e-58 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pte17g00462 Homeodomain 2.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00462 - - qsa:O6P43_028852 394.43