Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00457 ATGCTAGCTGTTTCGTCATTGAGGAACATTAAAGATGATCAGAACCAAAGCCAGATGGAAAACTTTTCTATTGAGCCGGACGATTTTATGGACTTCTCAGATGGAAACATACTGGATAGTATTAATTTCGATGATATTTTCATGGGTATCAACGATGAACATGTGTTGCCTGATCTGGAGATGGACTCCGAAATCCTTGCTGAGTTTTCCCTCAGCTGTGGTGGTGAGGAATCGGAGAGGACTTCATCCCCATCAGTAGAAAAACCTGAGGTATACACTGCTCAGAACACTACCCCCACCTCTGCGGCTGCTGCAGCTGCTGCTAGAGACAAAGAGGAGGAAGAGAAGCAATCTTCTTCAGCTGCTTCAGACACAGGCTTGAATTCCGGGTCAAGTAGAGGAGAGCAGATTATGAGGAAGAGAGATGAATCTGCCATGGTGAATCCATCGTCAAAGGAAACTGATAAGTCTAAGAAATCATCTGCACAATCGAAGAATTCTCAAGGGAAGCGAAAAGTAAAGGTGGATTGGACCCCAGAGTTACACAGGCGATTTGTGCAAGCCGTGGAACAGCTGGGTGTGGATAAGGCAGTCCCTTCGAGGATTTTAGAGATTATGGGAATTGATTGCCTAACTCGTCACAACATAGCAAGCCACCTTCAAAAATATCGATCTCATCGAAAACATCTGCTGGCTCGTGAAGCCGAAGCAGCAAGCTGGAGTCAAAGGAGGCAAATGTATGGTGTAGCAGCCGTCCCACCAGCCAATGGAGTGAAGAGAGATGCGAGCCCTTGGTTAGCACCGACCATCGGGTTCCCTCCCATGAGTCACATGCACCATTTTAGACCCTTACATGTGTGGGGGCATCCAACCATGGACCAGTCATTAATGCATATGTGGCCAAAACATGTATCTCATTCTCCATCTCCACCACCACCACCTCCACCACCAGTAAATCCACAACCTGCATGGACGCCACAACCATTAGCCACTACAACGACACCCCCTGACCCTTCATTTTGGCATGTTCACCACCAACGGGTACCGAGCCCCACTGCACTAACGCCAGTAACACCTTGCTTTCCTCAGCCTTTGCCTACAACGAGATTTACTTCTCCACCAGTCCCAGGCATCCCTCACCATCACGCCATGTACAAAGTAAATCAAGGCATTGGCTTCCTAACCGGGCAATCAGGCCCTCGCCCCCTTTTCGACTTTCATCCATCAAAAGAATGCATAGATGCAGCACTGGGAGATATTTTATCCAAACCATGGCTGCCGCTACCTCTCGGCCTCAAGCCTCCAGCCATTGAAAGCGTAATGGGAGAATTACAGCGACAAGGAGTTCCTAAGATCCCACCATCCAGCTCCTGA 1374 0.4847 MLAVSSLRNIKDDQNQSQMENFSIEPDDFMDFSDGNILDSINFDDIFMGINDEHVLPDLEMDSEILAEFSLSCGGEESERTSSPSVEKPEVYTAQNTTPTSAAAAAAARDKEEEEKQSSSAASDTGLNSGSSRGEQIMRKRDESAMVNPSSKETDKSKKSSAQSKNSQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQMYGVAAVPPANGVKRDASPWLAPTIGFPPMSHMHHFRPLHVWGHPTMDQSLMHMWPKHVSHSPSPPPPPPPPVNPQPAWTPQPLATTTTPPDPSFWHVHHQRVPSPTALTPVTPCFPQPLPTTRFTSPPVPGIPHHHAMYKVNQGIGFLTGQSGPRPLFDFHPSKECIDAALGDILSKPWLPLPLGLKPPAIESVMGELQRQGVPKIPPSSS* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00457 457 SUPERFAMILY Homeodomain-like 170 229 IPR009057 -
Pte17g00457 457 MobiDBLite consensus disorder prediction 301 338 - -
Pte17g00457 457 Pfam Myb-like DNA-binding domain 175 224 IPR001005 -
Pte17g00457 457 NCBIfam myb-like DNA-binding domain, SHAQKYF class 172 226 IPR006447 GO:0003677
Pte17g00457 457 FunFam Two-component response regulator 168 231 - -
Pte17g00457 457 MobiDBLite consensus disorder prediction 135 160 - -
Pte17g00457 457 Gene3D - 169 230 - -
Pte17g00457 457 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 169 228 IPR017930 -
Pte17g00457 457 MobiDBLite consensus disorder prediction 120 134 - -
Pte17g00457 457 MobiDBLite consensus disorder prediction 72 175 - -
Pte17g00457 457 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 456 IPR044825 GO:0003700|GO:0045893
Pte17g00457 457 MobiDBLite consensus disorder prediction 305 333 - -
Pte17g00457 457 MobiDBLite consensus disorder prediction 75 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00457 Pte-Chr17 5967533 5970760 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00457 9 309 G2-like Transcription Factor Family AT5G44190 43.548 3.99e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pte17g00457 Myb_DNA-binding 6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00457 - - jre:109001455 550.821