Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00455 ATGAGCAGCGACGATCATGATGATGAGTCTCACCCTGATTTTCTGGGACAAAAGTACGATGAATTCAATAGCAAGATTATGGTCACAGCTGTAGTTTCCTTAACGTTTGTCATATTCTTAGTCGTTGGACTCCATATATATGTAAGGTATGCTCTACGGCGTCAAGCTCGTAGTCGCGCTGCCATAAGTCAATTTGGTCTAACCGTGGCACACGCCAGGGCCAGTGAACCACCTACGACGACAGGTCTTGACCCGGCCATCCTTGTCGCTCTGCCAAGTTTTGTGTTCAAACCGCAACAATTTGGTCAAGCTCATGAAGATAGGAGGGGCACAGCAATGGATTGTCCAGTTTGTTTGAGCAACTTAGAGGTTGGAGAAATGGCGAGGTTGCTTCCTAATTGCAAGCATGTTTTTCATTTACAGTGCATTGATAAATGGTTGATAGCCAACCCCACTTGCCCAATTTGTCGAACTGAGGCTGAACCGCAGATTAAGCCGGAACCACGGGAGGGTCCGGTGACTGGTCTAGTCTGTGGTGACAATCGGAGCACACCTTCCGCTCCAGTTTTGGATGATCACATGAGTATTTCCATGCTAATGGTTGAAGGTGCATCAGATGGAGGACCAGAAGTTTCAGACAAAATGAATAGGTCAAATTCAAGGCTTAGTTCTTTCAGGAGGATGCTTAGTAGGGAGAGATCTTTAAGGAGAATTCAACCTCACAGCCAAGATGTCACCATGGAAGACTTGGAGAGACAATGA 762 0.4633 MSSDDHDDESHPDFLGQKYDEFNSKIMVTAVVSLTFVIFLVVGLHIYVRYALRRQARSRAAISQFGLTVAHARASEPPTTTGLDPAILVALPSFVFKPQQFGQAHEDRRGTAMDCPVCLSNLEVGEMARLLPNCKHVFHLQCIDKWLIANPTCPICRTEAEPQIKPEPREGPVTGLVCGDNRSTPSAPVLDDHMSISMLMVEGASDGGPEVSDKMNRSNSRLSSFRRMLSRERSLRRIQPHSQDVTMEDLERQ* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00455 253 SUPERFAMILY RING/U-box 108 164 - -
Pte17g00455 253 CDD RING-H2_EL5-like 114 157 - -
Pte17g00455 253 Pfam Ring finger domain 114 157 IPR001841 -
Pte17g00455 253 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 21 217 - -
Pte17g00455 253 MobiDBLite consensus disorder prediction 205 253 - -
Pte17g00455 253 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Pte17g00455 253 SMART ring_2 115 156 IPR001841 -
Pte17g00455 253 MobiDBLite consensus disorder prediction 226 253 - -
Pte17g00455 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 164 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00455 Pte-Chr17 5931498 5932698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00455 1 254 C3H Transcription Factor Family AT2G42360 41.509 9.24e-46 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00455 K19038 - qsu:112040063 224.942