LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte17g00452	ATGGCTCAATTGCCTCCTAAGATCCCAAATAGTCCTATTGCACCCAATTGGCATGATTTTTCCAACCAAAAGATACCTTCAATAGCAAGTTTCTCACCAAATAACAACACCAGCAATCAGAACAATCAAAACCCTTCGTGGGTTGATGAATTCCTCGATTTCTCAACGGCACGCCGGGGCTCTCACCGGCGGTCCATCAGCGATTCCATTGCGTTCCTTGAATCACCAACAATGCACGAATGCGGCAGTGGTAGCACGGCTATCCCACCGGAGTCTGGACATGAAGATGAGTTTGAAAGGTACGATGATCAACAATTCATGTCCATGTTCAATGATGAAATGTCAGGAGCCCACATGGCTGGCCATAATACTTCATCTTCCAACCCCTCCACACCTTCTGACCACAATAGCTTTAATGGTGAGAAAGAAACACAGAATGATCAGCAGCATCTGACCCAGAACAGCCAACAAAAGCACCAGGAGCAATTACAGCAGCAGTTGAAACGTGAGTATGAGGAGATTGAAAGTCAATATGTACAAGAGGGCCAAGCTGCACCTAATGACTCCACAACTACTTCTCTAATAACTGATCCTAAGAGGGTTAAAAGAATATTGGCAAATAGACAATCTGCTCAGAGATCGAGAGTGAGGAAGCTGCAATATGTATCGGAGCTAGAAAGAAGCGTAACTTCATTGCAGGCTGAAGTTTCAGTGCTGTCACCAAGAGTTGCATTCTTCGATCACCAGCGGTTACTTCTAAATGTTGACAACAGTGCCCTCAAGCAAAGAATCGCCGCCCTTGCTCAAGACAAAATCTTCAAAGATGCTCATCAAGAAGCACTGAAGAGGGAGATAGAGAGACTAAGGAAGATCTATCACCAGCAGAACCTCAAGAAGATGGAAAACTCAAAACAACCTACTGCGCCTTCTCATGAAATTACAGCAGACAAAGAGCTTCTCAATGCTTGA	969	0.4469	MAQLPPKIPNSPIAPNWHDFSNQKIPSIASFSPNNNTSNQNNQNPSWVDEFLDFSTARRGSHRRSISDSIAFLESPTMHECGSGSTAIPPESGHEDEFERYDDQQFMSMFNDEMSGAHMAGHNTSSSNPSTPSDHNSFNGEKETQNDQQHLTQNSQQKHQEQLQQQLKREYEEIESQYVQEGQAAPNDSTTTSLITDPKRVKRILANRQSAQRSRVRKLQYVSELERSVTSLQAEVSVLSPRVAFFDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRKIYHQQNLKKMENSKQPTAPSHEITADKELLNA*	323

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte17g00452	322	Coils	Coil	157	184	-	-
	Pte17g00452	322	Coils	Coil	278	298	-	-
	Pte17g00452	322	FunFam	Basic leucine zipper 61	198	271	-	-
	Pte17g00452	322	MobiDBLite	consensus disorder prediction	177	196	-	-
	Pte17g00452	322	MobiDBLite	consensus disorder prediction	118	162	-	-
	Pte17g00452	322	MobiDBLite	consensus disorder prediction	1	46	-	-
	Pte17g00452	322	MobiDBLite	consensus disorder prediction	76	96	-	-
	Pte17g00452	322	SUPERFAMILY	Leucine zipper domain	199	252	IPR046347	GO:0003700\|GO:0006355
	Pte17g00452	322	SMART	brlzneu	195	259	IPR004827	GO:0003700\|GO:0006355
	Pte17g00452	322	Pfam	Basic region leucine zipper	196	242	IPR004827	GO:0003700\|GO:0006355
	Pte17g00452	322	PANTHER	BASIC LEUCINE ZIPPER 34	1	308	-	-
	Pte17g00452	322	MobiDBLite	consensus disorder prediction	180	196	-	-
	Pte17g00452	322	MobiDBLite	consensus disorder prediction	298	322	-	-
	Pte17g00452	322	MobiDBLite	consensus disorder prediction	15	46	-	-
	Pte17g00452	322	MobiDBLite	consensus disorder prediction	116	165	-	-
	Pte17g00452	322	Gene3D	-	198	271	-	-
	Pte17g00452	322	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	197	244	IPR004827	GO:0003700\|GO:0006355
	Pte17g00452	322	CDD	bZIP_plant_RF2	200	250	IPR044759	GO:0003700\|GO:0006355
	Pte17g00452	322	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	202	217	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte17g00452	Pte-Chr17	5912055	5914191	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte17g00452	1	276	bZIP Transcription Factor Family	AT3G58120	55.892	2.02e-94	280

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Pte17g00452		bZIP_2	4.1e-09	CL0018

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte17g00452	-		-	qsa:O6P43_000796	396.356